BTNL2, chr6:32361740-32374905 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2395163 chr6:32387809 BTNL2 [+12904bp] All: C 103,235 14 C vs. T 0.283 (C) 0.1 (C) 0.87 (0.84-0.91) 0 (0-54) 5.00e-12
Meta_image?name=rs2395163

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2395163 chr6:32387809 BTNL2 [+12904bp] All: C 103,235 14 C vs. T 0.283 (C) 0.1 (C) 0.87 (0.84-0.91) 0 (0-54) 5.00e-12
rs9268433 chr6:32345891 C6orf10 [+6207bp] All: C 103,235 14 G vs. T 0.275 (G) 0.108 (G) 0.86 (0.83-0.90) 0 (0-52) 5.25e-12
rs9268484 chr6:32368513 BTNL2 All: C 103,235 14 C vs. T - - 1.17 (1.12-1.22) 0 (0-43) 7.34e-12
rs9268455 chr6:32349772 C6orf10 [+10088bp] All: C 103,235 14 T vs. C 0.275 (T) 0.092 (T) 0.87 (0.83-0.90) 0 (0-50) 7.46e-12
rs3793127 chr6:32371915 BTNL2 All: C 103,235 14 T vs. C 0.275 (T) 0.108 (T) 0.87 (0.84-0.91) 0 (0-53) 7.99e-12
rs9268451 chr6:32349086 C6orf10 [+9402bp] All: C 103,235 14 C vs. T 0.275 (C) 0.092 (C) 0.87 (0.83-0.90) 0 (0-50) 8.10e-12
rs3763309 chr6:32375973 BTNL2 [+1068bp] All: C 103,235 14 A vs. C 0.275 (A) 0.108 (A) 0.87 (0.84-0.91) 0 (0-53) 8.41e-12
rs3763312 chr6:32376348 BTNL2 [+1443bp] All: C 103,235 14 A vs. G 0.275 (A) 0.108 (A) 0.87 (0.84-0.91) 0 (0-51) 1.20e-11
rs9268522 chr6:32381443 BTNL2 [+6538bp] All: C 103,235 14 T vs. A 0.283 (T) 0.1 (T) 0.87 (0.84-0.91) 0 (0-51) 1.35e-11
rs9268521 chr6:32381374 BTNL2 [+6469bp] All: C 103,235 14 C vs. G 0.275 (C) 0.1 (C) 0.87 (0.84-0.91) 0 (0-51) 1.36e-11
rs9268627 chr6:32405821 HLA-DRA [-1798bp] All: C 103,235 14 C vs. T 0.283 (C) 0.108 (C) 0.87 (0.84-0.91) 0 (0-51) 1.84e-11
rs9268614 chr6:32402778 HLA-DRA [-4841bp] All: C 103,235 14 G vs. T 0.283 (G) 0.117 (G) 0.87 (0.84-0.91) 0 (0-51) 1.95e-11
rs9268581 chr6:32396930 HLA-DRA [-10689bp] All: C 103,235 14 A vs. G 0.283 (A) 0.1 (A) 0.87 (0.84-0.91) 0 (0-52) 2.21e-11
rs9268458 chr6:32350384 C6orf10 [+10700bp] All: C 103,235 14 A vs. C 0.342 (A) 0.283 (A) 0.89 (0.85-0.92) 0 (0-11) 5.08e-11
rs3763311 chr6:32376176 BTNL2 [+1271bp] All: C 103,235 14 T vs. C 0.342 (T) 0.333 (T) 0.89 (0.86-0.92) 0 (-) 6.01e-11
rs9268499 chr6:32375695 BTNL2 [+790bp] All: C 103,235 14 A vs. G 0.342 (A) 0.492 (A) 0.89 (0.86-0.92) 0 (-) 7.66e-11
rs9268515 chr6:32379295 BTNL2 [+4390bp] All: C 103,235 14 C vs. G 0.267 (C) 0.05 (C) 0.87 (0.83-0.90) 2 (0-56) 1.03e-10
rs3817963 chr6:32368087 BTNL2 All: C 103,235 14 C vs. T 0.342 (C) 0.283 (C) 0.89 (0.86-0.92) 0 (0-2) 1.30e-10
rs9268424 chr6:32343985 C6orf10 [+4301bp] All: C 103,235 14 C vs. T 0.342 (C) 0.133 (C) 0.89 (0.86-0.92) 0 (0-18) 1.41e-10
rs9268418 chr6:32343686 C6orf10 [+4002bp] All: C 103,235 14 C vs. T 0.342 (C) 0.133 (C) 0.89 (0.86-0.92) 0 (0-21) 1.42e-10
rs9268420 chr6:32343796 C6orf10 [+4112bp] All: C 103,235 14 T vs. C 0.333 (T) 0.133 (T) 0.89 (0.86-0.92) 0 (0-19) 1.48e-10
rs9268477 chr6:32359121 BTNL2 [-2619bp] All: C 103,235 14 A vs. G 0.342 (A) 0.15 (A) 0.89 (0.86-0.92) 0 (0-22) 1.53e-10
rs9268543 chr6:32384801 BTNL2 [+9896bp] All: C 103,235 14 T vs. A 0.258 (T) - 0.86 (0.82-0.90) 3 (0-56) 1.55e-10
rs9268516 chr6:32379489 BTNL2 [+4584bp] All: C 103,235 14 T vs. C 0.342 (T) 0.133 (T) 0.89 (0.86-0.92) 0 (0-25) 1.75e-10
rs9268514 chr6:32378945 BTNL2 [+4040bp] All: C 103,235 14 A vs. T 0.325 (A) 0.125 (A) 0.89 (0.86-0.92) 0 (0-25) 2.05e-10
rs3763316 chr6:32376746 BTNL2 [+1841bp] All: C 103,235 14 T vs. C 0.342 (T) 0.133 (T) 0.89 (0.86-0.92) 0 (0-22) 2.08e-10
rs9268449 chr6:32348467 C6orf10 [+8783bp] All: C 103,235 14 A vs. G 0.317 (A) 0.1 (A) 0.89 (0.86-0.92) 0 (0-29) 2.16e-10
rs9268448 chr6:32348463 C6orf10 [+8779bp] All: C 103,235 14 G vs. C 0.325 (G) 0.117 (G) 0.89 (0.86-0.92) 0 (0-29) 2.18e-10
rs9268456 chr6:32349946 C6orf10 [+10262bp] All: C 103,235 14 A vs. C 0.342 (A) 0.133 (A) 0.89 (0.86-0.92) 0 (0-19) 2.45e-10
rs9268457 chr6:32350036 C6orf10 [+10352bp] All: C 103,235 14 G vs. A 0.333 (G) 0.133 (G) 0.89 (0.86-0.92) 0 (0-19) 2.45e-10
rs9268459 chr6:32350776 BTNL2 [-10964bp] All: C 103,235 14 A vs. G 0.342 (A) 0.133 (A) 0.89 (0.86-0.92) 0 (0-18) 2.46e-10
rs9268452 chr6:32349494 C6orf10 [+9810bp] All: C 103,235 14 G vs. A 0.342 (G) 0.133 (G) 0.89 (0.86-0.92) 0 (0-19) 2.48e-10
rs9268475 chr6:32358231 BTNL2 [-3509bp] All: C 103,235 14 T vs. C 0.342 (T) 0.133 (T) 0.89 (0.86-0.92) 0 (0-20) 2.49e-10
rs9268491 chr6:32374131 BTNL2 All: C 103,235 14 G vs. C 0.35 (G) 0.133 (G) 0.89 (0.86-0.92) 0 (0-18) 2.52e-10
rs9268461 chr6:32351901 BTNL2 [-9839bp] All: C 103,235 14 A vs. C 0.342 (A) 0.133 (A) 0.89 (0.86-0.92) 0 (0-17) 2.56e-10
rs9268462 chr6:32351991 BTNL2 [-9749bp] All: C 103,235 14 C vs. A - - 1.12 (1.08-1.16) 0 (0-17) 2.57e-10
rs9268478 chr6:32360258 BTNL2 [-1482bp] All: C 103,235 14 G vs. A - - 1.12 (1.08-1.16) 0 (0-23) 2.57e-10
rs9268423 chr6:32343882 C6orf10 [+4198bp] All: C 103,235 14 T vs. C 0.342 (T) 0.125 (T) 0.89 (0.86-0.92) 0 (0-27) 3.83e-10
rs9268422 chr6:32343873 C6orf10 [+4189bp] All: C 103,235 14 A vs. G 0.325 (A) 0.117 (A) 0.89 (0.85-0.92) 0 (0-29) 3.89e-10
rs9268421 chr6:32343869 C6orf10 [+4185bp] All: C 103,235 14 G vs. A 0.3 (G) 0.117 (G) 0.89 (0.85-0.92) 0 (0-29) 3.90e-10
rs9268413 chr6:32343095 C6orf10 [+3411bp] All: C 103,235 14 C vs. T 0.325 (C) 0.142 (C) 0.87 (0.83-0.91) 0 (0-40) 3.41e-09
rs9268414 chr6:32343096 C6orf10 [+3412bp] All: C 103,235 14 A vs. G 0.342 (A) 0.133 (A) 0.87 (0.83-0.91) 0 (0-40) 3.43e-09
rs8180673 chr6:32347532 C6orf10 [+7848bp] All: C 103,235 14 T vs. C 0.342 (T) 0.133 (T) 0.83 (0.78-0.89) 0 (0-48) 1.98e-08
rs9268460 chr6:32351283 BTNL2 [-10457bp] All: C 103,235 14 T vs. C 0.492 (T) 0.333 (C) 1.10 (1.06-1.13) 42 (0-69) 3.17e-08
rs4373382 chr6:32350868 BTNL2 [-10872bp] All: C 103,235 14 A vs. C 0.5 (A) 0.317 (C) 1.10 (1.06-1.13) 42 (0-69) 3.18e-08
rs8180672 chr6:32347533 C6orf10 [+7849bp] All: C 103,235 14 G vs. A 0.342 (G) 0.133 (G) 0.84 (0.79-0.89) 0 (0-51) 3.28e-08
rs9268434 chr6:32346452 C6orf10 [+6768bp] All: C 103,235 14 T vs. A 0.5 (T) 0.333 (T) 0.91 (0.88-0.94) 42 (0-69) 3.95e-08
rs3135348 chr6:32394098 HLA-DRA [-13521bp] All: C 103,235 14 G vs. A - - 0.92 (0.89-0.95) 0 (0-48) 1.05e-07
rs2076523 chr6:32370835 BTNL2 All: C 103,235 14 C vs. T 0.392 (C) 0.467 (C) 0.91 (0.88-0.95) 0 (0-54) 1.16e-07
rs4321864 chr6:32399187 HLA-DRA [-8432bp] All: C 103,235 14 A vs. C 0.342 (A) 0.383 (A) 0.91 (0.88-0.94) 0 (0-0) 1.71e-07

Association studies for this region [+]