CPT2, chr1:53662101-53679869 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs79901635 chr1:53639682 CPT2 [-22419bp] C - 9 T vs. C 0.025 (T) - >1 (-) 0 (-) <1.00e-04

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs138336526 chr1:53627978 SLC1A7 [+19689bp] C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs6588471 chr1:53644967 CPT2 [-17134bp] C - 13 T vs. C 0.458 (T) 0.133 (T) <1 (-) 14 (-) >0.05
rs1288338 chr1:53628815 SLC1A7 [+20526bp] C - 13 T vs. C 0.233 (C) 0.092 (C) <1 (-) 0 (-) >0.05
rs1288340 chr1:53628061 SLC1A7 [+19772bp] C - 13 A vs. G 0.233 (G) 0.092 (G) <1 (-) 0 (-) >0.05
rs7516971 chr1:53626734 SLC1A7 [+18445bp] C - 13 C vs. G 0.283 (G) 0.292 (G) <1 (-) 0 (-) >0.05
rs915191 chr1:53723495 LRP8 C - 13 A vs. G 0.117 (G) - <1 (-) 25 (-) >0.05
rs12143903 chr1:53616509 SLC1A7 [+8220bp] C - 13 A vs. C 0.283 (A) 0.275 (A) >1 (-) 0 (-) >0.05
rs6696614 chr1:53613907 SLC1A7 [+5618bp] C - 13 A vs. T 0.283 (T) 0.283 (T) <1 (-) 0 (-) >0.05
rs76569730 chr1:53698223 MAGOH C - 13 T vs. C 0.117 (C) 0.017 (C) <1 (-) 19 (-) >0.05
rs17785382 chr1:53707953 LRP8 [-3264bp] C - 13 A vs. G 0.433 (G) 0.458 (A) >1 (-) 0 (-) >0.05
rs7526732 chr1:53658178 CPT2 [-3923bp] C - 13 A vs. G 0.467 (A) 0.2 (G) <1 (-) 0 (-) >0.05
rs77521422 chr1:53695306 MAGOH C - 12 T vs. C - 0.033 (C) <1 (-) 46 (-) >0.05
rs6704459 chr1:53643199 CPT2 [-18902bp] C - 13 C vs. G 0.483 (C) 0.133 (C) <1 (-) 20 (-) >0.05
rs12745290 chr1:53643887 CPT2 [-18214bp] C - 13 T vs. C - - <1 (-) 21 (-) >0.05
rs35352664 chr1:53628658 SLC1A7 [+20369bp] C - 13 A vs. G 0.267 (A) 0.292 (A) >1 (-) 0 (-) >0.05
rs149886197 chr1:53621977 SLC1A7 [+13688bp] C - 6 T vs. C - - <1 (-) 11 (-) >0.05
rs1679941 chr1:53614976 SLC1A7 [+6687bp] C - 13 A vs. G 0.45 (G) 0.392 (A) <1 (-) 0 (-) >0.05
rs12566930 chr1:53644258 CPT2 [-17843bp] C - 13 A vs. G 0.483 (A) 0.133 (A) <1 (-) 21 (-) >0.05
rs11206124 chr1:53660773 CPT2 [-1328bp] C - 13 A vs. G 0.358 (G) 0.492 (G) >1 (-) 0 (-) >0.05
rs74603832 chr1:53681020 C1orf123 C - 13 T vs. C 0.117 (C) - <1 (-) 13 (-) >0.05
rs17108140 chr1:53682678 C1orf123 C - 13 A vs. G 0.117 (A) - >1 (-) 13 (-) >0.05
rs1072706 chr1:53672688 CPT2 C - 13 T vs. C 0.358 (C) 0.492 (C) >1 (-) 0 (-) >0.05
rs12754957 chr1:53666108 CPT2 C - 13 T vs. C 0.358 (C) 0.492 (C) >1 (-) 0 (-) >0.05
rs12737375 chr1:53675532 CPT2 C - 13 T vs. C 0.358 (C) 0.492 (C) >1 (-) 0 (-) >0.05
rs3766760 chr1:53663128 CPT2 C - 13 T vs. G 0.358 (T) 0.475 (T) <1 (-) 0 (-) >0.05
rs17369394 chr1:53682106 C1orf123 C - 13 A vs. C 0.35 (C) 0.492 (C) >1 (-) 0 (-) >0.05
rs6588467 chr1:53630304 SLC1A7 [+22015bp] C - 13 A vs. G 0.433 (A) 0.375 (G) >1 (-) 0 (-) >0.05
rs113479909 chr1:53702871 MAGOH C - 13 A vs. T - - >1 (-) 0 (-) >0.05
rs1056438 chr1:53679878 C1orf123 C - 13 T vs. C 0.35 (C) 0.483 (C) >1 (-) 0 (-) >0.05
rs1628297 chr1:53614880 SLC1A7 [+6591bp] C - 13 T vs. C 0.45 (C) 0.392 (T) <1 (-) 0 (-) >0.05
rs12140585 chr1:53683921 C1orf123 C - 13 C vs. G 0.35 (G) 0.492 (G) >1 (-) 0 (-) >0.05
rs3736118 chr1:53684324 C1orf123 C - 13 A vs. G 0.358 (G) 0.492 (G) >1 (-) 0 (-) >0.05
rs6665477 chr1:53627891 SLC1A7 [+19602bp] C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs36038245 chr1:53628911 SLC1A7 [+20622bp] C - 13 T vs. C 0.267 (C) 0.275 (C) <1 (-) 0 (-) >0.05
rs2929074 chr1:53654573 CPT2 [-7528bp] C - 3 A vs. C - - >1 (-) 66 (-) >0.05
rs61769627 chr1:53724370 LRP8 C - 12 A vs. G 0.017 (A) 0.017 (A) <1 (-) 52 (-) >0.05
rs11665762 chr1:53634640 SLC1A7 [+26351bp] C - 3 A vs. G - - >1 (-) 0 (-) >0.05
rs78717670 chr1:53672380 CPT2 C - 13 T vs. C 0.117 (T) 0.008 (T) >1 (-) 13 (-) >0.05
rs61769626 chr1:53718060 LRP8 C - 12 T vs. C - 0.05 (C) >1 (-) 52 (-) >0.05
rs67974630 chr1:53684924 C1orf123 C - 13 A vs. G 0.358 (G) 0.475 (G) >1 (-) 0 (-) >0.05
rs61769620 chr1:53705904 MAGOH [+1622bp] C - 12 T vs. C 0.017 (T) 0.033 (T) <1 (-) 52 (-) >0.05
rs61769580 chr1:53636595 CPT2 [-25506bp] C - 10 C vs. G - - >1 (-) 45 (-) >0.05
rs80178823 chr1:53689077 C1orf123 [+2788bp] C - 13 T vs. C 0.025 (T) - >1 (-) 33 (-) >0.05
rs114425679 chr1:53639765 CPT2 [-22336bp] C - 10 A vs. C 0.017 (C) 0.025 (C) <1 (-) 45 (-) >0.05
rs61769616 chr1:53695467 MAGOH C - 12 T vs. C 0.017 (T) 0.05 (T) <1 (-) 51 (-) >0.05
rs57751940 chr1:53654167 CPT2 [-7934bp] C - 11 T vs. G 0.017 (T) 0.467 (T) >1 (-) 48 (-) >0.05
rs3766757 chr1:53678728 CPT2 C - 12 T vs. C - 0.067 (T) <1 (-) 0 (-) >0.05
rs1056425 chr1:53680090 C1orf123 C - 12 A vs. G 0.358 (A) 0.467 (A) <1 (-) 0 (-) >0.05
rs874349 chr1:53631902 SLC1A7 [+23613bp] C - 12 T vs. C 0.267 (T) 0.292 (T) >1 (-) 0 (-) >0.05
rs78117157 chr1:53666878 CPT2 C - 13 T vs. C 0.108 (T) - >1 (-) 14 (-) >0.05

These results originate from GWAS-only meta-analyses for which no additional data can be shared publicly. See Methods for further details.