CPXM1, chr20:2774715-2781283 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
Meta_image?name=rs7268763

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs7268763 chr20:2828596 VPS16 All: C 108,990 15 G vs. A 0.292 (G) 0.467 (G) 0.93 (0.90-0.96) 0 (0-37) 9.32e-05
rs16988130 chr20:2824849 VPS16 All: C 108,990 15 G vs. A 0.275 (G) 0.367 (G) 0.93 (0.90-0.97) 0 (0-35) 2.71e-04
rs6115678 chr20:2791995 TMEM239 [-3619bp] C - 13 A vs. C 0.4 (A) 0.375 (C) <1 (-) 0 (-) <0.05
rs11697539 chr20:2823247 VPS16 C - 13 T vs. C 0.242 (T) 0.375 (T) <1 (-) 0 (-) <0.05
rs873711 chr20:2827468 VPS16 C - 13 A vs. G 0.375 (A) 0.325 (G) <1 (-) 26 (-) <0.05
rs2325971 chr20:2826477 VPS16 C - 13 T vs. C 0.375 (T) 0.325 (C) <1 (-) 26 (-) <0.05
rs6084183 chr20:2811868 PCED1A [-4092bp] C - 13 T vs. C - - >1 (-) 12 (-) <0.05
rs4813619 chr20:2815715 PCED1A [-245bp] C - 13 T vs. G 0.492 (G) 0.117 (G) <1 (-) 12 (-) <0.05
rs6051425 chr20:2815318 PCED1A [-642bp] C - 13 C vs. G 0.492 (C) 0.117 (C) >1 (-) 11 (-) <0.05
rs751899 chr20:2818801 PCED1A C - 13 T vs. C 0.483 (T) 0.117 (T) >1 (-) 12 (-) <0.05
rs2325970 chr20:2818480 PCED1A C - 13 A vs. G 0.5 (A) 0.117 (A) >1 (-) 12 (-) <0.05
rs4815549 chr20:2830838 VPS16 C - 13 A vs. G - - >1 (-) 15 (-) <0.05
rs6132968 chr20:2783121 CPXM1 [+1838bp] C - 13 A vs. G 0.392 (G) 0.425 (A) >1 (-) 0 (-) <0.05
rs6084176 chr20:2784406 CPXM1 [+3123bp] C - 13 A vs. C 0.392 (A) 0.417 (C) <1 (-) 0 (-) <0.05
rs6037416 chr20:2784925 CPXM1 [+3642bp] C - 13 A vs. G 0.392 (G) 0.417 (A) >1 (-) 0 (-) <0.05
rs11087556 chr20:2785598 CPXM1 [+4315bp] C - 13 A vs. G 0.392 (G) 0.417 (A) >1 (-) 0 (-) <0.05
rs73083225 chr20:2823380 VPS16 C - 13 A vs. C - - <1 (-) 0 (-) <0.05
rs11697820 chr20:2781441 CPXM1 [+158bp] C - 13 T vs. C 0.408 (C) 0.4 (T) >1 (-) 0 (-) <0.05
rs742707 chr20:2777828 CPXM1 C - 13 T vs. G 0.4 (G) 0.433 (T) >1 (-) 0 (-) <0.05
rs215519 chr20:2758377 CPXM1 [-16338bp] C - 13 A vs. G 0.483 (A) 0.175 (G) <1 (-) 0 (-) <0.05
rs215517 chr20:2756896 EBF4 [+16143bp] C - 13 T vs. C 0.483 (T) 0.158 (C) <1 (-) 0 (-) <0.05
rs215518 chr20:2757537 EBF4 [+16784bp] C - 13 A vs. G 0.483 (G) 0.175 (A) >1 (-) 0 (-) <0.05
rs6051368 chr20:2744846 EBF4 [+4093bp] C - 13 T vs. C 0.483 (C) 0.208 (T) >1 (-) 0 (-) <0.05
rs127073 chr20:2787994 CPXM1 [+6711bp] C - 13 A vs. G 0.425 (A) 0.4 (G) <1 (-) 0 (-) <0.05
rs85166 chr20:2788274 CPXM1 [+6991bp] C - 13 T vs. C 0.417 (C) 0.4 (T) >1 (-) 0 (-) <0.05
rs117351323 chr20:2752170 EBF4 [+11417bp] C - 10 A vs. C 0.017 (A) - >1 (-) 0 (-) <0.05
rs215556 chr20:2788897 TMEM239 [-6717bp] C - 13 A vs. G - - <1 (-) 0 (-) <0.05
rs7273259 chr20:2767262 CPXM1 [-7453bp] C - 13 A vs. G 0.433 (A) 0.267 (A) >1 (-) 0 (-) <0.05
rs117658905 chr20:2762549 CPXM1 [-12166bp] C - 5 A vs. G 0.008 (G) - <1 (-) 47 (-) <0.05
rs6037397 chr20:2755060 EBF4 [+14307bp] C - 13 T vs. C 0.075 (T) 0.45 (T) <1 (-) 0 (-) <0.05
rs6037396 chr20:2754867 EBF4 [+14114bp] C - 13 T vs. C 0.075 (C) 0.45 (C) >1 (-) 0 (-) <0.05
rs6051389 chr20:2763122 CPXM1 [-11593bp] C - 13 C vs. G - - >1 (-) 0 (-) <0.05
rs215520 chr20:2759013 CPXM1 [-15702bp] C - 13 T vs. C 0.467 (T) 0.475 (C) <1 (-) 0 (-) <0.05
rs35371067 chr20:2757408 EBF4 [+16655bp] C - 13 T vs. G - - <1 (-) 0 (-) <0.05
rs6051376 chr20:2754335 EBF4 [+13582bp] C - 13 A vs. G - - <1 (-) 0 (-) <0.05
rs6084177 chr20:2791245 TMEM239 [-4369bp] C - 13 A vs. G 0.383 (A) 0.4 (A) <1 (-) 0 (-) <0.05
rs215523 chr20:2760705 CPXM1 [-14010bp] C - 13 A vs. G 0.467 (G) 0.467 (A) >1 (-) 0 (-) <0.05
rs215543 chr20:2780151 CPXM1 C - 13 A vs. G 0.2 (G) 0.417 (G) >1 (-) 0 (-) <0.05
rs215521 chr20:2760044 CPXM1 [-14671bp] C - 13 A vs. G 0.467 (A) 0.467 (G) <1 (-) 0 (-) <0.05
rs742708 chr20:2749334 EBF4 [+8581bp] C - 13 A vs. C 0.442 (C) 0.483 (A) >1 (-) 0 (-) <0.05
rs13044205 chr20:2752608 EBF4 [+11855bp] C - 13 T vs. G 0.075 (T) 0.45 (T) <1 (-) 0 (-) <0.05
rs215524 chr20:2760835 CPXM1 [-13880bp] C - 13 A vs. G 0.467 (A) 0.467 (G) <1 (-) 0 (-) <0.05
rs35461134 chr20:2752777 EBF4 [+12024bp] C - 13 A vs. T 0.075 (T) 0.442 (T) >1 (-) 0 (-) <0.05
rs215545 chr20:2782015 CPXM1 [+732bp] C - 13 T vs. C 0.2 (T) 0.417 (T) <1 (-) 0 (-) <0.05
rs7268366 chr20:2782522 CPXM1 [+1239bp] C - 13 T vs. C 0.108 (T) 0.225 (T) <1 (-) 0 (-) <0.05
rs67367303 chr20:2773790 CPXM1 [-925bp] C - 13 C vs. G 0.117 (C) 0.425 (C) <1 (-) 0 (-) <0.05
rs11087557 chr20:2791341 TMEM239 [-4273bp] C - 13 A vs. T 0.108 (T) 0.333 (T) >1 (-) 0 (-) <0.05
rs215555 chr20:2787651 CPXM1 [+6368bp] C - 13 T vs. C - - >1 (-) 3 (-) <0.05
rs10153972 chr20:2746980 EBF4 [+6227bp] C - 13 A vs. G 0.058 (A) 0.242 (A) <1 (-) 0 (-) <0.05
rs6051381 chr20:2755102 EBF4 [+14349bp] C - 13 T vs. G 0.058 (G) 0.158 (G) >1 (-) 0 (-) <0.05

Association studies for this region [+]