GPNMB, chr7:23275586-23314727 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs199347 chr7:23293746 GPNMB All: C 120,238 21 G vs. A 0.392 (G) 0.325 (G) 0.90 (0.87-0.92) 11 (0-46) 5.62e-14
Meta_image?name=rs199347

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs80003387 chr7:23347880 MALSU1 C - 10 A vs. G 0.05 (A) - >1 (-) 0 (-) <0.05
rs17796841 chr7:23353514 IGF2BP3 C - 10 T vs. C 0.05 (C) - <1 (-) 0 (-) <0.05
rs78213073 chr7:23256951 NUPL2 [+16321bp] C - 10 C vs. G 0.058 (C) - <1 (-) 6 (-) <0.05
rs41273975 chr7:23236835 NUPL2 C - 11 A vs. G - - <1 (-) 0 (-) <0.05
rs139440593 chr7:23277758 GPNMB C - 11 T vs. C - - <1 (-) 0 (-) >0.05
rs199659 chr7:23330202 MALSU1 [-8156bp] C - 13 A vs. T 0.142 (A) 0.25 (A) >1 (-) 22 (-) >0.05
rs10232205 chr7:23230554 NUPL2 C - 10 A vs. C 0.083 (C) - >1 (-) 0 (-) >0.05
rs199356 chr7:23288550 GPNMB C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs10234873 chr7:23264413 GPNMB [-11173bp] C - 10 T vs. G - - >1 (-) 39 (-) >0.05
rs76497142 chr7:23231803 NUPL2 C - 10 A vs. G 0.133 (A) - >1 (-) 22 (-) >0.05
rs117525978 chr7:23330428 MALSU1 [-7930bp] C - 8 A vs. T 0.017 (T) - <1 (-) 0 (-) >0.05
rs7795053 chr7:23253361 NUPL2 [+12731bp] C - 10 A vs. G 0.033 (G) - >1 (-) 20 (-) >0.05
rs3757449 chr7:23308906 GPNMB C - 10 C vs. G - - <1 (-) 0 (-) >0.05
rs2268741 chr7:23351557 IGF2BP3 C - 9 A vs. G - - >1 (-) 0 (-) >0.05
rs141769898 chr7:23258179 GPNMB [-17407bp] C - 7 T vs. C - - >1 (-) 0 (-) >0.05
rs141072360 chr7:23346463 MALSU1 C - 7 C vs. G - - >1 (-) 0 (-) >0.05
rs2268748 chr7:23313171 GPNMB C - 8 T vs. C 0.017 (C) 0.342 (C) <1 (-) 0 (-) >0.05
rs116921120 chr7:23323194 GPNMB [+8467bp] C - 8 A vs. G 0.017 (A) - >1 (-) 0 (-) >0.05
rs143704568 chr7:23323415 GPNMB [+8688bp] C - 8 A vs. G - - <1 (-) 0 (-) >0.05
rs75523457 chr7:23307408 GPNMB C - 10 A vs. G 0.017 (A) - <1 (-) 0 (-) >0.05
rs1783 chr7:23297588 GPNMB C - 13 A vs. T 0.025 (A) - <1 (-) 0 (-) >0.05
rs156418 chr7:23354413 IGF2BP3 C - 13 A vs. G 0.008 (A) 0.175 (A) <1 (-) 0 (-) >0.05
rs117151817 chr7:23358880 IGF2BP3 C - 13 T vs. G 0.017 (T) - <1 (-) 0 (-) >0.05
rs156411 chr7:23359853 IGF2BP3 C - 13 A vs. G 0.008 (G) - >1 (-) 0 (-) >0.05
rs17147940 chr7:23286284 GPNMB C - 4 A vs. G - 0.092 (G) <1 (-) 63 (-) >0.05
rs156416 chr7:23356036 IGF2BP3 C - 13 C vs. G - - <1 (-) 0 (-) >0.05
rs34832582 chr7:23234374 NUPL2 C - 7 A vs. C - - >1 (-) 0 (-) >0.05
rs156417 chr7:23354481 IGF2BP3 C - 13 A vs. G 0.008 (A) 0.167 (A) <1 (-) 0 (-) >0.05
rs138673631 chr7:23356187 IGF2BP3 C - 8 A vs. G - - >1 (-) 0 (-) >0.05
rs459704 chr7:23335168 MALSU1 [-3190bp] C - 13 C vs. G 0.008 (G) 0.15 (G) >1 (-) 0 (-) >0.05
rs860817 chr7:23251469 NUPL2 [+10839bp] C - 13 A vs. G 0.033 (A) - <1 (-) 0 (-) >0.05
rs113996538 chr7:23351161 MALSU1 C - 13 T vs. C - 0.017 (T) <1 (-) 0 (-) >0.05
rs199350 chr7:23300450 GPNMB C - 13 T vs. G 0.025 (T) - <1 (-) 0 (-) >0.05
rs199352 chr7:23299071 GPNMB C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs467440 chr7:23360425 IGF2BP3 C - 13 C vs. G - - <1 (-) 0 (-) >0.05
rs199346 chr7:23293772 GPNMB C - 13 C vs. G 0.025 (G) - >1 (-) 0 (-) >0.05
rs6955934 chr7:23251499 NUPL2 [+10869bp] C - 13 T vs. G 0.033 (T) - <1 (-) 0 (-) >0.05
rs1728322 chr7:23232120 NUPL2 C - 13 C vs. G - - <1 (-) 0 (-) >0.05
rs114623230 chr7:23361705 IGF2BP3 C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs156410 chr7:23349440 MALSU1 C - 13 C vs. G - 0.142 (G) >1 (-) 0 (-) >0.05
rs156428 chr7:23306500 GPNMB C - 13 T vs. C 0.025 (T) 0.017 (T) <1 (-) 0 (-) >0.05
rs858285 chr7:23249518 NUPL2 [+8888bp] C - 13 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs156427 chr7:23307143 GPNMB C - 13 A vs. G 0.025 (A) 0.017 (A) <1 (-) 0 (-) >0.05
rs143855864 chr7:23321521 GPNMB [+6794bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs199354 chr7:23296572 GPNMB C - 13 T vs. C 0.025 (T) - <1 (-) 0 (-) >0.05
rs156426 chr7:23307475 GPNMB C - 13 T vs. C 0.025 (C) - >1 (-) 0 (-) >0.05
rs166664 chr7:23345883 MALSU1 C - 13 T vs. C - 0.15 (T) <1 (-) 0 (-) >0.05
rs156424 chr7:23310017 GPNMB C - 13 A vs. C 0.025 (A) - <1 (-) 0 (-) >0.05
rs78150344 chr7:23328968 MALSU1 [-9390bp] C - 13 A vs. G - 0.15 (G) >1 (-) 0 (-) >0.05
rs78294387 chr7:23328983 MALSU1 [-9375bp] C - 13 A vs. C - 0.017 (A) <1 (-) 0 (-) >0.05

Association studies for this region [+]