GPNMB, chr7:23275586-23314727 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs199347 chr7:23293746 GPNMB All: C 120,238 21 G vs. A 0.392 (G) 0.325 (G) 0.90 (0.87-0.92) 11 (0-46) 5.62e-14
Meta_image?name=rs199347

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs199358 chr7:23287875 GPNMB C - 13 A vs. G 0.025 (A) 0.017 (A) <1 (-) 0 (-) >0.05
rs156422 chr7:23310550 GPNMB C - 13 A vs. C 0.025 (A) 0.017 (A) <1 (-) 0 (-) >0.05
rs1637247 chr7:23303087 GPNMB C - 13 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs456866 chr7:23335603 MALSU1 [-2755bp] C - 13 A vs. C 0.008 (C) 0.15 (C) >1 (-) 0 (-) >0.05
rs464428 chr7:23334475 MALSU1 [-3883bp] C - 13 A vs. G - 0.15 (G) >1 (-) 0 (-) >0.05
rs461239 chr7:23334438 MALSU1 [-3920bp] C - 13 T vs. C - 0.15 (T) <1 (-) 0 (-) >0.05
rs464452 chr7:23334413 MALSU1 [-3945bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs199349 chr7:23302588 GPNMB C - 13 A vs. G 0.025 (G) - >1 (-) 0 (-) >0.05
rs112140075 chr7:23261386 GPNMB [-14200bp] C - 11 A vs. G - 0.125 (G) <1 (-) 15 (-) >0.05
rs79701819 chr7:23244456 NUPL2 [+3826bp] C - 10 T vs. G 0.017 (G) - >1 (-) 9 (-) >0.05
rs156423 chr7:23310149 GPNMB C - 13 A vs. G 0.025 (G) - >1 (-) 0 (-) >0.05
rs461344 chr7:23334236 MALSU1 [-4122bp] C - 13 C vs. G - 0.15 (G) >1 (-) 0 (-) >0.05
rs35686290 chr7:23318669 GPNMB [+3942bp] C - 11 C vs. G 0.108 (G) - <1 (-) 19 (-) >0.05
rs467459 chr7:23331208 MALSU1 [-7150bp] C - 13 T vs. C 0.008 (T) 0.133 (T) <1 (-) 0 (-) >0.05
rs156409 chr7:23348396 MALSU1 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs156415 chr7:23357154 IGF2BP3 C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs1728323 chr7:23232455 NUPL2 C - 13 A vs. G 0.033 (A) - <1 (-) 0 (-) >0.05
rs199360 chr7:23360174 IGF2BP3 C - 13 T vs. C - 0.017 (T) <1 (-) 0 (-) >0.05
rs192439 chr7:23347733 MALSU1 C - 13 C vs. G 0.008 (C) 0.008 (C) <1 (-) 0 (-) >0.05
rs156413 chr7:23357637 IGF2BP3 C - 13 C vs. G - - <1 (-) 0 (-) >0.05
rs6950139 chr7:23345410 MALSU1 C - 13 C vs. G 0.008 (C) - <1 (-) 0 (-) >0.05
rs14114 chr7:23314194 GPNMB C - 13 A vs. C 0.025 (C) 0.017 (C) >1 (-) 0 (-) >0.05
rs156408 chr7:23316252 GPNMB [+1525bp] C - 13 C vs. G 0.025 (G) - >1 (-) 0 (-) >0.05
rs166662 chr7:23315803 GPNMB [+1076bp] C - 13 C vs. G 0.025 (G) - >1 (-) 0 (-) >0.05
rs2529003 chr7:23320911 GPNMB [+6184bp] C - 13 T vs. C 0.017 (C) - >1 (-) 0 (-) >0.05
rs858281 chr7:23250567 NUPL2 [+9937bp] C - 13 A vs. G 0.033 (A) - <1 (-) 0 (-) >0.05
rs156419 chr7:23353310 IGF2BP3 C - 13 T vs. G - - >1 (-) 0 (-) >0.05
rs138740275 chr7:23351253 MALSU1 C - 13 T vs. G - - >1 (-) 0 (-) >0.05
rs457656 chr7:23336317 MALSU1 [-2041bp] C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs464336 chr7:23334755 MALSU1 [-3603bp] C - 13 A vs. G 0.008 (G) - >1 (-) 0 (-) >0.05
rs860818 chr7:23250363 NUPL2 [+9733bp] C - 13 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs113585740 chr7:23342476 MALSU1 C - 13 A vs. G - 0.108 (A) <1 (-) 0 (-) >0.05
rs156404 chr7:23340618 MALSU1 C - 13 T vs. C 0.008 (T) 0.017 (T) <1 (-) 0 (-) >0.05
rs156405 chr7:23340159 MALSU1 C - 13 T vs. C - - <1 (-) 0 (-) >0.05
rs370896 chr7:23331605 MALSU1 [-6753bp] C - 13 A vs. G - - >1 (-) 0 (-) >0.05
rs460445 chr7:23328098 MALSU1 [-10260bp] C - 13 C vs. G - - >1 (-) 0 (-) >0.05
rs6972276 chr7:23245860 NUPL2 [+5230bp] C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs858277 chr7:23252261 NUPL2 [+11631bp] C - 13 T vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs858278 chr7:23252202 NUPL2 [+11572bp] C - 13 T vs. C 0.033 (C) 0.017 (C) >1 (-) 0 (-) >0.05
rs858276 chr7:23252553 NUPL2 [+11923bp] C - 13 A vs. G 0.033 (G) - >1 (-) 0 (-) >0.05
rs2696715 chr7:23231910 NUPL2 C - 12 A vs. T - - >1 (-) 0 (-) >0.05
rs1637217 chr7:23236072 NUPL2 C - 13 T vs. C 0.033 (T) 0.017 (T) <1 (-) 0 (-) >0.05
rs1637245 chr7:23329412 MALSU1 [-8946bp] C - 13 T vs. C - 0.15 (C) >1 (-) 0 (-) >0.05
rs1728321 chr7:23232098 NUPL2 C - 13 A vs. C - - <1 (-) 0 (-) >0.05
rs463155 chr7:23333053 MALSU1 [-5305bp] C - 13 T vs. C - - >1 (-) 0 (-) >0.05
rs6959313 chr7:23234469 NUPL2 C - 12 C vs. G - - <1 (-) 0 (-) >0.05
rs858302 chr7:23244243 NUPL2 [+3613bp] C - 13 T vs. G 0.033 (T) - <1 (-) 0 (-) >0.05
rs858280 chr7:23250874 NUPL2 [+10244bp] C - 13 A vs. T 0.033 (A) - <1 (-) 0 (-) >0.05
rs140133178 chr7:23298524 GPNMB C - 13 A vs. G - - <1 (-) 0 (-) >0.05
rs858287 chr7:23249213 NUPL2 [+8583bp] C - 13 T vs. C 0.033 (T) 0.017 (T) <1 (-) 0 (-) >0.05

Association studies for this region [+]