HCG27, chr6:31165537-31171745 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9263873 chr6:31170713 HCG27 All: C 103,235 14 C vs. T 0.375 (C) 0.492 (C) 0.94 (0.91-0.97) 0 (0-54) 1.35e-04
rs6936604 chr6:31174926 HCG27 [+3181bp] All: C 103,235 14 C vs. T 0.275 (C) 0.317 (C) 0.94 (0.91-0.97) 3 (0-56) 1.47e-04
rs3130931 chr6:31134888 TCF19 All: C 97,715 13 T vs. C 0.333 (T) 0.392 (T) 1.07 (1.03-1.11) 0 (0-31) 1.68e-04
rs9263875 chr6:31170914 HCG27 All: C 103,235 14 G vs. A 0.4 (G) 0.425 (G) 0.94 (0.91-0.97) 0 (0-53) 1.78e-04
rs9391712 chr6:31166719 HCG27 All: C 103,235 14 C vs. T - - 1.08 (1.04-1.13) 27 (0-61) 1.84e-04
rs28360063 chr6:31160298 HCG27 [-5239bp] All: C 103,235 14 A vs. G 0.175 (A) 0.375 (A) 0.92 (0.89-0.96) 26 (0-61) 1.92e-04
rs28360061 chr6:31160131 HCG27 [-5406bp] All: C 103,235 14 A vs. G 0.175 (A) 0.367 (A) 0.92 (0.89-0.96) 26 (0-61) 1.93e-04
rs28360060 chr6:31159533 HCG27 [-6004bp] All: C 103,235 14 C vs. T - - 1.09 (1.04-1.13) 25 (0-60) 1.96e-04
rs7755702 chr6:31158373 HCG27 [-7164bp] All: C 103,235 14 G vs. A - 0.367 (A) 1.08 (1.04-1.13) 26 (0-61) 1.96e-04
rs9391818 chr6:31157738 HCG27 [-7799bp] All: C 103,235 14 A vs. G - - 1.08 (1.04-1.13) 26 (0-61) 1.98e-04
rs9405052 chr6:31157709 HCG27 [-7828bp] All: C 103,235 14 C vs. T - - 1.08 (1.04-1.13) 26 (0-61) 1.98e-04
rs9378115 chr6:31156465 POU5F1 [+7957bp] All: C 103,235 14 T vs. C 0.175 (T) 0.367 (T) 0.92 (0.89-0.96) 26 (0-61) 2.04e-04
rs9357115 chr6:31155991 POU5F1 [+7483bp] All: C 103,235 14 T vs. C - - 1.08 (1.04-1.13) 26 (0-61) 2.06e-04
rs3130430 chr6:31219180 HLA-C [-17346bp] C - 10 A vs. C 0.417 (A) 0.367 (A) >1 (-) 0 (-) <0.05
rs9264188 chr6:31220109 HLA-C [-16417bp] C - 9 T vs. C 0.417 (C) 0.45 (T) <1 (-) 4 (-) <0.05
rs28360056 chr6:31155434 POU5F1 [+6926bp] All: C 103,235 14 G vs. A - - 1.08 (1.04-1.13) 25 (0-60) 2.25e-04
rs4713442 chr6:31155405 POU5F1 [+6897bp] All: C 103,235 14 T vs. C - - 1.08 (1.04-1.13) 25 (0-60) 2.25e-04
rs3134752 chr6:31217539 HLA-C [-18987bp] C - 10 C vs. G 0.408 (C) 0.375 (C) >1 (-) 1 (-) <0.05
rs28397286 chr6:31167573 HCG27 All: C 103,235 14 A vs. G 0.175 (A) 0.375 (A) 0.92 (0.89-0.96) 25 (0-60) 2.28e-04
rs6899875 chr6:31154897 POU5F1 [+6389bp] All: C 103,235 14 G vs. A - - 1.08 (1.04-1.13) 25 (0-60) 2.30e-04
rs10807081 chr6:31169764 HCG27 C - 12 T vs. G 0.075 (T) 0.258 (T) <1 (-) 37 (-) <0.05
rs3134763 chr6:31210774 HLA-C [-25752bp] C - 12 A vs. C 0.408 (A) 0.383 (A) >1 (-) 18 (-) <0.05
rs34837204 chr6:31188436 HCG27 [+16691bp] All: C 103,235 14 C vs. T - - 1.11 (1.05-1.18) 37 (0-66) 2.45e-04
rs28397285 chr6:31167347 HCG27 All: C 103,235 14 A vs. G 0.2 (A) 0.392 (A) 0.93 (0.90-0.97) 26 (0-61) 2.48e-04
rs2894188 chr6:31215331 HLA-C [-21195bp] C - 10 T vs. C 0.408 (T) - >1 (-) 0 (-) <0.05
rs11967600 chr6:31199573 HCG27 [+27828bp] All: C 103,235 14 T vs. C 0.133 (T) 0.125 (T) 0.90 (0.85-0.95) 37 (0-66) 2.52e-04
rs28360062 chr6:31160218 HCG27 [-5319bp] All: C 103,235 14 C vs. T - - 1.08 (1.04-1.13) 26 (0-61) 2.52e-04
rs28397270 chr6:31164635 HCG27 [-902bp] All: C 103,235 14 C vs. T 0.2 (C) 0.383 (C) 0.93 (0.89-0.97) 21 (0-58) 2.53e-04
rs3130540 chr6:31219862 HLA-C [-16664bp] C - 10 T vs. C 0.425 (T) 0.45 (C) >1 (-) 0 (-) <0.05
rs9264179 chr6:31219869 HLA-C [-16657bp] C - 10 T vs. C 0.442 (T) 0.442 (C) >1 (-) 0 (-) <0.05
rs9264187 chr6:31220027 HLA-C [-16499bp] C - 9 T vs. C 0.417 (T) 0.433 (C) >1 (-) 0 (-) <0.05
rs3130423 chr6:31218208 HLA-C [-18318bp] C - 10 A vs. G 0.442 (A) 0.45 (A) >1 (-) 7 (-) <0.05
rs2394908 chr6:31217973 HLA-C [-18553bp] C - 10 T vs. C 0.433 (C) 0.467 (C) <1 (-) 0 (-) <0.05
rs3132494 chr6:31210691 HLA-C [-25835bp] C - 12 A vs. G 0.433 (A) 0.467 (A) >1 (-) 22 (-) <0.05
rs34467061 chr6:31169575 HCG27 All: C 103,235 14 G vs. A - - 1.08 (1.04-1.12) 17 (0-55) 2.74e-04
rs28397293 chr6:31205004 HLA-C [-31522bp] All: C 103,235 14 C vs. T - - 1.11 (1.05-1.18) 38 (0-67) 2.76e-04
rs3130425 chr6:31218327 HLA-C [-18199bp] C - 10 T vs. C 0.433 (T) 0.45 (T) >1 (-) 3 (-) <0.05
rs3130537 chr6:31210796 HLA-C [-25730bp] C - 12 A vs. G 0.433 (A) 0.483 (A) >1 (-) 21 (-) <0.05
rs3134765 chr6:31210577 HLA-C [-25949bp] C - 12 T vs. C 0.433 (T) 0.467 (T) >1 (-) 22 (-) <0.05
rs28480108 chr6:31210532 HLA-C [-25994bp] C - 12 A vs. G 0.408 (A) 0.308 (A) >1 (-) 15 (-) <0.05
rs28397271 chr6:31164643 HCG27 [-894bp] All: C 103,235 14 T vs. C 0.2 (T) 0.383 (T) 0.93 (0.89-0.97) 21 (0-58) 2.93e-04
rs6922553 chr6:31164242 HCG27 [-1295bp] All: C 103,235 14 C vs. T - - 1.08 (1.04-1.13) 17 (0-55) 2.94e-04
rs6922842 chr6:31164236 HCG27 [-1301bp] All: C 103,235 14 G vs. A - - 1.09 (1.04-1.14) 12 (0-50) 3.02e-04
rs2394905 chr6:31216507 HLA-C [-20019bp] C - 10 A vs. C - - >1 (-) 3 (-) <0.05
rs28397269 chr6:31164595 HCG27 [-942bp] All: C 103,235 14 A vs. G 0.175 (A) 0.225 (A) 0.92 (0.88-0.96) 34 (0-65) 3.07e-04
rs3130412 chr6:31216262 HLA-C [-20264bp] C - 10 A vs. G 0.433 (G) 0.467 (G) <1 (-) 2 (-) <0.05
rs3130419 chr6:31217741 HLA-C [-18785bp] C - 10 T vs. C 0.433 (T) 0.483 (T) >1 (-) 3 (-) <0.05
rs2894189 chr6:31217815 HLA-C [-18711bp] C - 10 A vs. C 0.433 (A) 0.467 (A) >1 (-) 3 (-) <0.05
rs3094194 chr6:31136240 POU5F1 All: C 103,235 14 A vs. G - - 0.94 (0.91-0.97) 30 (0-63) 3.13e-04
rs28360066 chr6:31164517 HCG27 [-1020bp] All: C 103,235 14 C vs. T - - 1.08 (1.04-1.13) 14 (0-52) 3.14e-04

Association studies for this region [+]