HCG27, chr6:31165537-31171745 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6919136 chr6:31182934 HCG27 [+11189bp] C - 12 A vs. G 0.033 (G) 0.225 (G) <1 (-) 37 (-) >0.05
rs9468898 chr6:31182383 HCG27 [+10638bp] C - 12 A vs. G - 0.108 (G) <1 (-) 37 (-) >0.05
rs9468908 chr6:31216227 HLA-C [-20299bp] C - 8 A vs. G - - >1 (-) 53 (-) >0.05
rs59049261 chr6:31181715 HCG27 [+9970bp] C - 12 T vs. C 0.017 (T) 0.2 (T) >1 (-) 37 (-) >0.05
rs9263947 chr6:31180680 HCG27 [+8935bp] C - 12 T vs. G 0.45 (T) 0.433 (G) >1 (-) 0 (-) >0.05
rs118024262 chr6:31119188 CCHCR1 C - 5 T vs. C - 0.117 (T) >1 (-) 0 (-) >0.05
rs116493652 chr6:31131796 TCF19 C - 5 A vs. G - - <1 (-) 20 (-) >0.05
rs55893378 chr6:31211403 HLA-C [-25123bp] C - 9 A vs. G 0.025 (A) - <1 (-) 0 (-) >0.05
rs78564856 chr6:31214008 HLA-C [-22518bp] C - 5 A vs. G 0.025 (A) 0.092 (A) >1 (-) 0 (-) >0.05
rs9263968 chr6:31186368 HCG27 [+14623bp] C - 12 A vs. G 0.45 (G) 0.45 (A) >1 (-) 0 (-) >0.05
rs140918932 chr6:31172903 HCG27 [+1158bp] C - 6 A vs. G - - >1 (-) 0 (-) >0.05
rs73728463 chr6:31219885 HLA-C [-16641bp] C - 4 A vs. T 0.025 (T) - >1 (-) 0 (-) >0.05
rs887467 chr6:31141664 POU5F1 C - 12 C vs. G 0.358 (G) 0.358 (G) >1 (-) 0 (-) >0.05
rs148997121 chr6:31217245 HLA-C [-19281bp] C - 3 A vs. G - - <1 (-) 0 (-) >0.05
rs9501076 chr6:31165218 HCG27 [-319bp] C - 12 T vs. C - - <1 (-) 33 (-) >0.05
rs143855333 chr6:31181087 HCG27 [+9342bp] C - 6 T vs. G - - <1 (-) 0 (-) >0.05
rs76911046 chr6:31218586 HLA-C [-17940bp] C - 4 T vs. C - 0.083 (C) <1 (-) 0 (-) >0.05
rs77321052 chr6:31218160 HLA-C [-18366bp] C - 4 C vs. G - 0.092 (C) >1 (-) 0 (-) >0.05
rs9263938 chr6:31179378 HCG27 [+7633bp] C - 12 T vs. C 0.45 (C) 0.45 (T) <1 (-) 0 (-) >0.05
rs1265156 chr6:31142297 POU5F1 C - 12 A vs. C 0.25 (A) 0.425 (A) >1 (-) 0 (-) >0.05
rs141424817 chr6:31179547 HCG27 [+7802bp] C - 6 A vs. T - - <1 (-) 0 (-) >0.05
rs9263931 chr6:31178547 HCG27 [+6802bp] C - 12 A vs. G - 0.392 (G) >1 (-) 0 (-) >0.05
rs144098353 chr6:31173833 HCG27 [+2088bp] C - 6 A vs. T - - <1 (-) 0 (-) >0.05
rs9468907 chr6:31215097 HLA-C [-21429bp] C - 8 T vs. G - - >1 (-) 52 (-) >0.05
rs113343816 chr6:31217424 HLA-C [-19102bp] C - 4 T vs. C 0.025 (T) 0.092 (T) >1 (-) 0 (-) >0.05
rs115620472 chr6:31217376 HLA-C [-19150bp] C - 4 T vs. C 0.025 (T) 0.075 (T) >1 (-) 0 (-) >0.05
rs61283711 chr6:31178203 HCG27 [+6458bp] C - 12 T vs. C 0.033 (C) 0.208 (C) <1 (-) 37 (-) >0.05
rs9263960 chr6:31184877 HCG27 [+13132bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs6903896 chr6:31168029 HCG27 C - 12 A vs. G 0.033 (A) 0.1 (A) >1 (-) 37 (-) >0.05
rs112405988 chr6:31217335 HLA-C [-19191bp] C - 4 A vs. G 0.025 (G) 0.092 (G) <1 (-) 0 (-) >0.05
rs9263956 chr6:31182971 HCG27 [+11226bp] C - 12 T vs. C 0.458 (C) 0.433 (T) >1 (-) 0 (-) >0.05
rs9263964 chr6:31186039 HCG27 [+14294bp] C - 12 T vs. C 0.45 (C) 0.45 (T) >1 (-) 0 (-) >0.05
rs9263855 chr6:31156994 POU5F1 [+8486bp] C - 11 T vs. G - - <1 (-) 0 (-) >0.05
rs9263903 chr6:31175081 HCG27 [+3336bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs28742574 chr6:31164294 HCG27 [-1243bp] C - 11 A vs. G - - >1 (-) 0 (-) >0.05
rs885701 chr6:31143900 POU5F1 C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs364786 chr6:31144291 POU5F1 C - 12 T vs. G - - >1 (-) 0 (-) >0.05
rs138078412 chr6:31203639 HCG27 [+31894bp] C - 5 A vs. G - - >1 (-) 0 (-) >0.05
rs3869109 chr6:31184196 HCG27 [+12451bp] C - 12 A vs. G 0.45 (A) 0.45 (G) >1 (-) 0 (-) >0.05
rs76061950 chr6:31154878 POU5F1 [+6370bp] C - 12 A vs. G - - <1 (-) 38 (-) >0.05
rs1793899 chr6:31170131 HCG27 C - 12 A vs. G 0.008 (A) - <1 (-) 0 (-) >0.05
chr6:31219263 chr6:31219263 HLA-C [-17263bp] C - 3 A vs. G - - >1 (-) 0 (-) >0.05
rs1265161 chr6:31137660 POU5F1 C - 12 A vs. G 0.008 (A) - >1 (-) 0 (-) >0.05
rs1345274 chr6:31190627 HCG27 [+18882bp] C - 12 C vs. G - - <1 (-) 0 (-) >0.05
rs1265183 chr6:31153147 POU5F1 [+4639bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs1265182 chr6:31153904 POU5F1 [+5396bp] C - 12 T vs. G - - >1 (-) 0 (-) >0.05
rs138864366 chr6:31168702 HCG27 C - 5 C vs. G - - <1 (-) 20 (-) >0.05
rs1265180 chr6:31159345 HCG27 [-6192bp] C - 12 A vs. C 0.008 (A) - >1 (-) 0 (-) >0.05
rs1265184 chr6:31151762 POU5F1 [+3254bp] C - 12 A vs. G 0.008 (A) - >1 (-) 0 (-) >0.05
rs1634703 chr6:31185262 HCG27 [+13517bp] C - 12 A vs. G 0.008 (A) - <1 (-) 0 (-) >0.05

Association studies for this region [+]