HCG27, chr6:31165537-31171745 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs28397272 chr6:31164739 HCG27 [-798bp] All: C 103,235 14 A vs. C 0.175 (A) 0.367 (A) 0.93 (0.89-0.97) 30 (0-63) 5.34e-04
rs3130431 chr6:31219342 HLA-C [-17184bp] C - 10 A vs. G 0.417 (A) 0.325 (A) >1 (-) 1 (-) <0.05
rs3130418 chr6:31217403 HLA-C [-19123bp] C - 10 T vs. C 0.408 (T) 0.308 (T) >1 (-) 0 (-) <0.05
rs3095248 chr6:31209288 HLA-C [-27238bp] C - 12 T vs. C 0.433 (T) 0.383 (T) >1 (-) 29 (-) <0.05
rs28397274 chr6:31164763 HCG27 [-774bp] All: C 103,235 14 G vs. A 0.167 (G) 0.367 (G) 0.93 (0.89-0.97) 21 (0-58) 5.61e-04
rs2394906 chr6:31216558 HLA-C [-19968bp] C - 10 A vs. T 0.425 (A) 0.3 (A) >1 (-) 0 (-) <0.05
rs3130416 chr6:31216918 HLA-C [-19608bp] C - 10 A vs. T 0.408 (T) 0.317 (T) <1 (-) 0 (-) <0.05
rs116780006 chr6:31199765 HCG27 [+28020bp] C - 12 T vs. C 0.033 (T) - >1 (-) 0 (-) <0.05
rs28749549 chr6:31157830 HCG27 [-7707bp] All: C 103,235 14 T vs. C 0.175 (T) 0.242 (T) 0.93 (0.89-0.97) 27 (0-61) 5.93e-04
rs3130534 chr6:31209045 HLA-C [-27481bp] C - 12 A vs. G 0.433 (G) 0.45 (A) <1 (-) 33 (-) <0.05
rs9380221 chr6:31150873 POU5F1 [+2365bp] All: C 103,235 14 C vs. T 0.183 (C) 0.375 (C) 0.93 (0.89-0.97) 29 (0-63) 6.23e-04
rs139587602 chr6:31210279 HLA-C [-26247bp] C - 12 T vs. C - - >1 (-) 0 (-) <0.05
rs28360058 chr6:31155615 POU5F1 [+7107bp] All: C 103,235 14 G vs. A 0.175 (G) 0.2 (G) 0.93 (0.89-0.97) 28 (0-62) 6.34e-04
rs3130515 chr6:31190122 HCG27 [+18377bp] All: C 103,235 14 C vs. T - - 0.92 (0.88-0.97) 5 (0-57) 6.42e-04
rs3130451 chr6:31123242 CCHCR1 All: C 103,235 14 G vs. A - - 0.94 (0.90-0.97) 0 (0-15) 6.43e-04
rs3130406 chr6:31209839 HLA-C [-26687bp] C - 12 A vs. G 0.4 (G) 0.308 (G) <1 (-) 30 (-) <0.05
rs28360059 chr6:31155920 POU5F1 [+7412bp] All: C 103,235 14 G vs. A - - 1.08 (1.03-1.13) 28 (0-62) 6.62e-04
rs9380220 chr6:31146584 POU5F1 All: C 103,235 14 T vs. G 0.175 (T) 0.375 (T) 0.93 (0.90-0.97) 29 (0-62) 6.73e-04
rs28397277 chr6:31164943 HCG27 [-594bp] All: C 103,235 14 A vs. G 0.175 (A) 0.242 (A) 0.93 (0.89-0.97) 28 (0-62) 6.74e-04
rs11961983 chr6:31168483 HCG27 All: C 103,235 14 G vs. A 0.175 (G) 0.242 (G) 0.93 (0.89-0.97) 27 (0-61) 6.79e-04
rs28397284 chr6:31166936 HCG27 All: C 103,235 14 C vs. T 0.175 (C) 0.233 (C) 0.93 (0.89-0.97) 28 (0-62) 6.79e-04
rs116011117 chr6:31194753 HCG27 [+23008bp] C - 12 T vs. C 0.033 (C) - <1 (-) 0 (-) <0.05
rs3130516 chr6:31190128 HCG27 [+18383bp] All: C 103,235 14 C vs. T - - 0.93 (0.88-0.97) 3 (0-56) 7.07e-04
rs3130436 chr6:31220783 HLA-C [-15743bp] All: C 91,003 11 G vs. A 0.225 (G) 0.333 (G) 1.10 (1.04-1.16) 0 (0-37) 7.09e-04
rs1052989 chr6:31146403 POU5F1 All: C 103,235 14 T vs. C 0.175 (T) 0.375 (T) 0.93 (0.90-0.97) 29 (0-63) 7.16e-04
rs11507945 chr6:31145755 POU5F1 All: C 103,235 14 A vs. G 0.175 (A) 0.375 (A) 0.93 (0.90-0.97) 29 (0-63) 7.18e-04
rs9357113 chr6:31149091 POU5F1 [+583bp] All: C 103,235 14 T vs. G 0.175 (T) 0.375 (T) 0.93 (0.89-0.97) 28 (0-62) 7.20e-04
rs6921663 chr6:31154620 POU5F1 [+6112bp] All: C 103,235 14 C vs. T 0.2 (C) 0.4 (C) 0.94 (0.90-0.97) 17 (0-55) 7.26e-04
rs2394893 chr6:31206719 HLA-C [-29807bp] C - 12 A vs. G 0.417 (G) 0.367 (G) <1 (-) 0 (-) <0.05
rs3130450 chr6:31121513 CCHCR1 All: C 103,235 14 T vs. C - - 0.94 (0.91-0.97) 0 (0-9) 7.36e-04
rs114210995 chr6:31210638 HLA-C [-25888bp] C - 11 A vs. G 0.033 (A) 0.017 (A) >1 (-) 0 (-) <0.05
rs2394901 chr6:31214353 HLA-C [-22173bp] C - 9 T vs. G 0.408 (T) 0.308 (T) >1 (-) 0 (-) <0.05
rs3130432 chr6:31219357 HLA-C [-17169bp] C - 10 A vs. G 0.4 (A) 0.408 (A) <1 (-) 24 (-) <0.05
rs2022084 chr6:31117053 CCHCR1 All: C 103,235 14 A vs. G 0.292 (A) 0.4 (A) 1.06 (1.03-1.10) 0 (0-6) 7.71e-04
rs11967684 chr6:31199766 HCG27 [+28021bp] All: C 103,235 14 A vs. G 0.358 (A) 0.308 (A) 0.95 (0.91-0.98) 13 (0-51) 7.91e-04
rs3130498 chr6:31117619 CCHCR1 All: C 103,235 14 T vs. C 0.283 (T) 0.425 (T) 1.06 (1.03-1.10) 0 (0-6) 7.91e-04
rs149162659 chr6:31191744 HCG27 [+19999bp] C - 12 A vs. G - - >1 (-) 0 (-) <0.05
rs3887152 chr6:31176335 HCG27 [+4590bp] All: C 103,235 14 T vs. C 0.4 (T) 0.3 (T) 0.95 (0.91-0.98) 8 (0-45) 7.98e-04
rs28570051 chr6:31210601 HLA-C [-25925bp] C - 12 T vs. C 0.4 (T) 0.408 (T) <1 (-) 37 (-) <0.05
rs9368663 chr6:31156155 POU5F1 [+7647bp] All: C 103,235 14 T vs. C 0.183 (T) 0.367 (T) 0.93 (0.90-0.97) 8 (0-45) 8.30e-04
rs3134749 chr6:31219469 HLA-C [-17057bp] C - 10 T vs. C 0.4 (T) 0.408 (T) <1 (-) 19 (-) <0.05
rs115878234 chr6:31192110 HCG27 [+20365bp] C - 12 A vs. G 0.033 (A) - >1 (-) 0 (-) <0.05
rs3094609 chr6:31165566 HCG27 All: C 103,235 14 T vs. C 0.192 (T) 0.167 (T) 1.08 (1.03-1.13) 25 (0-60) 8.45e-04
rs3095250 chr6:31208340 HLA-C [-28186bp] C - 12 T vs. C 0.408 (C) 0.417 (C) <1 (-) 30 (-) <0.05
rs2394943 chr6:31220388 HLA-C [-16138bp] All: C 91,003 11 T vs. C 0.25 (T) 0.467 (T) 1.09 (1.04-1.15) 0 (0-41) 8.47e-04
rs3094608 chr6:31166683 HCG27 All: C 103,235 14 G vs. A 0.192 (G) 0.167 (G) 1.08 (1.03-1.13) 28 (0-62) 8.50e-04
rs3130462 chr6:31165277 HCG27 [-260bp] All: C 103,235 14 A vs. G 0.192 (A) 0.167 (A) 1.08 (1.03-1.13) 25 (0-60) 8.50e-04
rs115057643 chr6:31188995 HCG27 [+17250bp] C - 12 C vs. G 0.033 (C) - >1 (-) 0 (-) <0.05
rs3130461 chr6:31164700 HCG27 [-837bp] All: C 103,235 14 G vs. A 0.208 (G) 0.2 (G) 1.08 (1.03-1.13) 24 (0-60) 8.58e-04
rs3130535 chr6:31209947 HLA-C [-26579bp] C - 12 A vs. T 0.408 (A) 0.3 (A) >1 (-) 33 (-) <0.05

Association studies for this region [+]