HCG27, chr6:31165537-31171745 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3130463 chr6:31165962 HCG27 All: C 103,235 14 G vs. A 0.192 (G) 0.167 (G) 1.08 (1.03-1.13) 25 (0-60) 8.66e-04
rs6928399 chr6:31195218 HCG27 [+23473bp] All: C 103,235 14 T vs. C 0.358 (T) 0.308 (T) 0.95 (0.91-0.98) 1 (0-55) 8.72e-04
rs9368662 chr6:31156148 POU5F1 [+7640bp] All: C 103,235 14 T vs. G 0.183 (T) 0.367 (T) 0.93 (0.90-0.97) 8 (0-45) 8.96e-04
rs9264189 chr6:31220163 HLA-C [-16363bp] All: C 91,003 11 A vs. C 0.225 (A) 0.467 (A) 1.09 (1.04-1.15) 0 (0-36) 9.12e-04
rs3134771 chr6:31203744 HCG27 [+31999bp] C - 12 T vs. C - - >1 (-) 0 (-) <0.05
rs116069039 chr6:31198493 HCG27 [+26748bp] C - 12 A vs. G 0.033 (G) - <1 (-) 0 (-) <0.05
rs11967629 chr6:31145413 POU5F1 All: C 103,235 14 T vs. C 0.175 (T) 0.375 (T) 0.93 (0.90-0.97) 27 (0-61) 9.75e-04
rs3130533 chr6:31208788 HLA-C [-27738bp] C - 12 A vs. T 0.392 (T) 0.408 (T) >1 (-) 35 (-) <0.05
rs3130501 chr6:31136453 POU5F1 All: C 103,235 14 A vs. G 0.292 (A) 0.392 (A) 1.06 (1.03-1.10) 0 (0-23) 9.96e-04
rs11967011 chr6:31221540 HLA-C [-14986bp] C - 4 T vs. C 0.175 (C) 0.283 (C) >1 (-) 41 (-) <0.05
rs2394900 chr6:31213611 HLA-C [-22915bp] C - 11 C vs. G 0.408 (C) - >1 (-) 23 (-) <0.05
rs3130429 chr6:31219133 HLA-C [-17393bp] C - 10 A vs. G 0.4 (G) 0.392 (G) >1 (-) 24 (-) <0.05
rs879882 chr6:31139452 POU5F1 C - 12 T vs. C 0.358 (T) 0.408 (C) >1 (-) 2 (-) <0.05
rs9263852 chr6:31156385 POU5F1 [+7877bp] C - 12 C vs. G - - <1 (-) 21 (-) <0.05
rs3134767 chr6:31209860 HLA-C [-26666bp] C - 12 T vs. C 0.367 (C) 0.392 (C) >1 (-) 36 (-) <0.05
rs3132498 chr6:31208027 HLA-C [-28499bp] C - 12 T vs. C 0.4 (T) 0.408 (T) <1 (-) 34 (-) <0.05
rs2240059 chr6:31120614 CCHCR1 All: C 103,235 14 C vs. T 0.283 (C) 0.408 (C) 1.06 (1.02-1.10) 0 (0-9) 0.001
rs3132496 chr6:31208610 HLA-C [-27916bp] C - 12 T vs. G 0.433 (G) 0.408 (G) <1 (-) 29 (-) <0.05
rs3134769 chr6:31205754 HLA-C [-30772bp] C - 12 T vs. C 0.392 (T) 0.258 (T) >1 (-) 0 (-) <0.05
rs3130952 chr6:31177915 HCG27 [+6170bp] All: C 103,235 14 G vs. A 0.192 (G) 0.167 (G) 1.08 (1.03-1.13) 23 (0-59) 0.001
rs17197839 chr6:31221299 HLA-C [-15227bp] C - 4 A vs. G 0.117 (A) 0.142 (A) <1 (-) 47 (-) <0.05
rs28397296 chr6:31206747 HLA-C [-29779bp] All: C 103,235 14 T vs. C 0.175 (T) 0.233 (T) 0.93 (0.89-0.97) 26 (0-61) 0.001
rs2394902 chr6:31214557 HLA-C [-21969bp] C - 10 T vs. C 0.4 (T) 0.425 (T) <1 (-) 15 (-) <0.05
rs3134772 chr6:31203217 HCG27 [+31472bp] C - 12 C vs. G 0.408 (G) 0.25 (G) <1 (-) 0 (-) <0.05
rs3132516 chr6:31203074 HCG27 [+31329bp] C - 12 T vs. G - - >1 (-) 0 (-) <0.05
rs3130521 chr6:31196376 HCG27 [+24631bp] C - 12 T vs. C 0.392 (T) 0.308 (T) >1 (-) 0 (-) <0.05
rs3132522 chr6:31137759 POU5F1 C - 12 T vs. C 0.283 (T) 0.408 (T) >1 (-) 0 (-) <0.05
rs9264181 chr6:31219922 HLA-C [-16604bp] C - 10 T vs. C - - <1 (-) 14 (-) <0.05
rs3132523 chr6:31136832 POU5F1 C - 12 T vs. C 0.283 (T) 0.392 (T) >1 (-) 0 (-) <0.05
rs4713438 chr6:31146846 POU5F1 C - 12 A vs. G 0.15 (A) 0.158 (A) >1 (-) 27 (-) <0.05
rs3130929 chr6:31135207 POU5F1 All: C 103,235 14 T vs. C 0.275 (T) 0.342 (T) 1.06 (1.02-1.10) 0 (0-24) 0.002
rs9264098 chr6:31204315 HLA-C [-32211bp] C - 12 T vs. C 0.4 (T) - >1 (-) 0 (-) <0.05
rs2394892 chr6:31205382 HLA-C [-31144bp] All: C 103,235 14 A vs. G 0.175 (A) 0.233 (A) 0.93 (0.90-0.98) 25 (0-60) 0.002
rs3130928 chr6:31136097 POU5F1 C - 12 A vs. C - - <1 (-) 0 (-) <0.05
rs7768431 chr6:31202665 HCG27 [+30920bp] All: C 103,235 14 A vs. G 0.167 (A) 0.233 (A) 0.93 (0.90-0.98) 25 (0-60) 0.002
rs3130417 chr6:31216940 HLA-C [-19586bp] C - 10 A vs. C 0.4 (A) 0.408 (A) <1 (-) 20 (-) <0.05
rs3130500 chr6:31119976 CCHCR1 C - 12 A vs. T - 0.417 (T) <1 (-) 0 (-) <0.05
rs6919493 chr6:31175627 HCG27 [+3882bp] All: C 103,235 14 A vs. G 0.175 (A) 0.183 (A) 0.94 (0.90-0.98) 24 (0-60) 0.002
rs1052986 chr6:31146439 POU5F1 C - 12 C vs. G 0.108 (C) 0.108 (C) >1 (-) 12 (-) <0.05
rs130078 chr6:31118565 CCHCR1 C - 12 C vs. G 0.308 (C) 0.4 (C) >1 (-) 0 (-) <0.05
rs3130499 chr6:31119889 CCHCR1 C - 12 T vs. C - - >1 (-) 0 (-) <0.05
rs9263804 chr6:31135706 POU5F1 C - 12 T vs. C 0.283 (C) 0.392 (C) <1 (-) 0 (-) <0.05
rs7452529 chr6:31220253 HLA-C [-16273bp] C - 9 A vs. T 0.233 (T) 0.483 (T) <1 (-) 0 (-) <0.05
rs3095245 chr6:31213902 HLA-C [-22624bp] C - 11 T vs. C 0.4 (C) 0.408 (C) >1 (-) 19 (-) <0.05
rs9264191 chr6:31220232 HLA-C [-16294bp] C - 9 C vs. G 0.225 (G) 0.475 (G) <1 (-) 0 (-) <0.05
rs6913631 chr6:31152098 POU5F1 [+3590bp] C - 12 A vs. C - - <1 (-) 0 (-) <0.05
chr6:31210079 chr6:31210079 HLA-C [-26447bp] C - 6 A vs. G - - <1 (-) 8 (-) <0.05
rs3130409 chr6:31213811 HLA-C [-22715bp] C - 11 A vs. G 0.4 (A) 0.408 (A) <1 (-) 19 (-) <0.05
rs3132524 chr6:31136714 POU5F1 C - 12 T vs. C 0.283 (T) 0.392 (T) >1 (-) 0 (-) <0.05
rs9264190 chr6:31220202 HLA-C [-16324bp] C - 9 T vs. C 0.233 (T) 0.45 (T) >1 (-) 0 (-) <0.05

Association studies for this region [+]