HCG27, chr6:31165537-31171745 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs28397304 chr6:31219913 HLA-C [-16613bp] C - 5 A vs. G 0.167 (A) 0.258 (A) <1 (-) 50 (-) <0.05
rs7449932 chr6:31220244 HLA-C [-16282bp] C - 9 T vs. C 0.225 (C) 0.467 (C) <1 (-) 0 (-) <0.05
rs1265160 chr6:31138371 POU5F1 C - 12 A vs. G - - <1 (-) 36 (-) <0.05
rs3130452 chr6:31123313 CCHCR1 C - 12 A vs. G - - >1 (-) 0 (-) <0.05
rs3130504 chr6:31137837 POU5F1 C - 11 A vs. T 0.3 (A) 0.4 (A) >1 (-) 0 (-) <0.05
rs3134747 chr6:31220567 HLA-C [-15959bp] C - 9 T vs. C 0.217 (C) 0.225 (C) <1 (-) 0 (-) <0.05
rs3734872 chr6:31143804 POU5F1 C - 12 T vs. G 0.108 (G) 0.125 (G) <1 (-) 7 (-) <0.05
rs3131013 chr6:31115604 CCHCR1 C - 12 T vs. C 0.308 (T) 0.342 (T) >1 (-) 0 (-) <0.05
rs3132535 chr6:31116526 CCHCR1 C - 12 A vs. G 0.325 (A) 0.4 (A) >1 (-) 0 (-) <0.05
rs9263758 chr6:31115874 CCHCR1 C - 12 A vs. G 0.308 (A) 0.35 (A) >1 (-) 0 (-) <0.05
rs3134754 chr6:31216329 HLA-C [-20197bp] C - 10 A vs. G 0.4 (G) - >1 (-) 18 (-) <0.05
rs3130438 chr6:31221022 HLA-C [-15504bp] C - 8 T vs. C 0.217 (T) 0.242 (T) >1 (-) 0 (-) <0.05
rs35718543 chr6:31177845 HCG27 [+6100bp] C - 12 A vs. G 0.05 (A) 0.083 (A) >1 (-) 43 (-) <0.05
rs3134755 chr6:31216300 HLA-C [-20226bp] C - 10 T vs. C 0.392 (T) 0.392 (T) <1 (-) 15 (-) <0.05
rs3130497 chr6:31116649 CCHCR1 C - 12 T vs. C 0.208 (T) - >1 (-) 33 (-) <0.05
rs2073723 chr6:31130078 TCF19 C - 11 T vs. C 0.283 (T) 0.392 (T) >1 (-) 0 (-) <0.05
rs1065461 chr6:31130502 TCF19 C - 11 T vs. C 0.283 (T) 0.392 (T) >1 (-) 0 (-) <0.05
rs2073722 chr6:31129642 TCF19 C - 11 A vs. C 0.25 (A) 0.3 (A) >1 (-) 0 (-) <0.05
rs3095254 chr6:31221668 HLA-C [-14858bp] C - 4 C vs. G 0.35 (C) 0.492 (C) >1 (-) 0 (-) <0.05
rs3130433 chr6:31219638 HLA-C [-16888bp] C - 9 A vs. G 0.225 (A) 0.3 (A) >1 (-) 0 (-) <0.05
rs114399250 chr6:31180774 HCG27 [+9029bp] C - 12 A vs. G 0.033 (A) 0.083 (A) >1 (-) 25 (-) <0.05
rs9295957 chr6:31157593 HCG27 [-7944bp] C - 12 A vs. G 0.175 (A) 0.375 (A) <1 (-) 37 (-) <0.05
rs3130695 chr6:31211050 HLA-C [-25476bp] C - 12 A vs. G 0.217 (A) 0.217 (A) >1 (-) 0 (-) <0.05
rs9295958 chr6:31158184 HCG27 [-7353bp] C - 12 A vs. T 0.175 (A) 0.375 (A) <1 (-) 36 (-) <0.05
rs6941912 chr6:31161571 HCG27 [-3966bp] C - 12 C vs. G 0.175 (C) 0.367 (C) <1 (-) 37 (-) <0.05
rs1265113 chr6:31117577 CCHCR1 C - 12 C vs. G 0.117 (G) 0.242 (G) >1 (-) 39 (-) <0.05
rs1265163 chr6:31134087 TCF19 C - 12 C vs. G 0.117 (G) 0.258 (G) >1 (-) 38 (-) <0.05
rs73403026 chr6:31181130 HCG27 [+9385bp] C - 12 A vs. G 0.058 (A) 0.075 (A) >1 (-) 42 (-) <0.05
rs28360055 chr6:31155304 POU5F1 [+6796bp] C - 12 C vs. G - - >1 (-) 34 (-) <0.05
rs9263988 chr6:31191287 HCG27 [+19542bp] C - 12 T vs. C - 0.05 (T) >1 (-) 0 (-) <0.05
rs9263992 chr6:31192587 HCG27 [+20842bp] C - 12 A vs. C 0.05 (C) 0.058 (C) <1 (-) 0 (-) <0.05
rs3130933 chr6:31132085 TCF19 C - 12 T vs. C 0.167 (T) 0.033 (T) >1 (-) 35 (-) <0.05
rs3094610 chr6:31165150 HCG27 [-387bp] C - 12 C vs. G - - <1 (-) 28 (-) <0.05
rs4582416 chr6:31216162 HLA-C [-20364bp] C - 8 T vs. C - 0.017 (T) >1 (-) 10 (-) <0.05
rs9461648 chr6:31142719 POU5F1 C - 12 T vs. C 0.092 (C) 0.125 (C) <1 (-) 14 (-) <0.05
rs9468877 chr6:31142903 POU5F1 C - 12 A vs. G 0.108 (A) 0.125 (A) >1 (-) 14 (-) <0.05
rs9461649 chr6:31143158 POU5F1 C - 12 T vs. C 0.108 (T) 0.125 (T) >1 (-) 14 (-) <0.05
rs4343960 chr6:31156606 POU5F1 [+8098bp] C - 12 A vs. C 0.192 (A) 0.167 (A) >1 (-) 31 (-) <0.05
rs9468885 chr6:31151413 POU5F1 [+2905bp] C - 12 A vs. C - - <1 (-) 0 (-) <0.05
rs9461650 chr6:31143241 POU5F1 C - 12 A vs. G 0.108 (A) 0.2 (A) >1 (-) 24 (-) <0.05
rs9468879 chr6:31143249 POU5F1 C - 12 A vs. C 0.108 (A) 0.125 (A) >1 (-) 24 (-) <0.05
rs2073721 chr6:31129616 TCF19 C - 10 A vs. G 0.283 (A) 0.392 (A) >1 (-) 0 (-) <0.05
rs3130502 chr6:31136666 POU5F1 All: C 103,235 14 A vs. G 0.283 (A) 0.392 (A) 1.05 (1.02-1.09) 0 (0-35) 0.006
rs9264042 chr6:31196801 HCG27 [+25056bp] C - 12 A vs. G 0.058 (A) 0.05 (A) >1 (-) 15 (-) <0.05
rs3095257 chr6:31220318 HLA-C [-16208bp] C - 9 T vs. G 0.383 (G) 0.458 (T) <1 (-) 16 (-) <0.05
rs3095237 chr6:31161347 HCG27 [-4190bp] C - 12 A vs. G 0.192 (A) 0.158 (A) >1 (-) 29 (-) <0.05
rs3130520 chr6:31195120 HCG27 [+23375bp] C - 12 T vs. C 0.192 (T) 0.25 (T) >1 (-) 31 (-) <0.05
rs3130460 chr6:31160188 HCG27 [-5349bp] C - 12 A vs. G - - >1 (-) 28 (-) <0.05
rs3095238 chr6:31161210 HCG27 [-4327bp] C - 12 T vs. G 0.192 (T) 0.158 (T) >1 (-) 28 (-) <0.05
rs4713441 chr6:31155284 POU5F1 [+6776bp] C - 12 A vs. T - - >1 (-) 35 (-) <0.05

Association studies for this region [+]