HCG27, chr6:31165537-31171745 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3094189 chr6:31141970 POU5F1 C - 12 A vs. C 0.175 (C) 0.05 (C) <1 (-) 28 (-) <0.05
rs11507946 chr6:31145733 POU5F1 C - 11 A vs. T - - <1 (-) 0 (-) <0.05
rs2394942 chr6:31220364 HLA-C [-16162bp] C - 9 T vs. C 0.225 (T) 0.467 (T) >1 (-) 0 (-) <0.05
rs3130954 chr6:31172937 HCG27 [+1192bp] C - 12 A vs. G 0.175 (G) 0.033 (G) <1 (-) 29 (-) <0.05
rs3134782 chr6:31197633 HCG27 [+25888bp] C - 12 A vs. G 0.192 (G) 0.25 (G) <1 (-) 28 (-) <0.05
rs3095252 chr6:31194747 HCG27 [+23002bp] C - 12 A vs. G 0.192 (G) 0.175 (G) <1 (-) 28 (-) <0.05
rs3132507 chr6:31175613 HCG27 [+3868bp] C - 12 A vs. C 0.192 (A) - >1 (-) 26 (-) <0.05
rs3734869 chr6:31143639 POU5F1 C - 12 A vs. G 0.133 (A) 0.133 (A) >1 (-) 0 (-) <0.05
rs3134789 chr6:31144695 POU5F1 C - 12 T vs. C 0.192 (T) - >1 (-) 28 (-) <0.05
rs3869112 chr6:31197815 HCG27 [+26070bp] C - 12 C vs. G - - <1 (-) 13 (-) <0.05
rs3131017 chr6:31147081 POU5F1 C - 12 T vs. C 0.192 (C) 0.175 (C) <1 (-) 29 (-) <0.05
rs3868078 chr6:31199164 HCG27 [+27419bp] C - 12 T vs. C 0.058 (T) 0.058 (T) >1 (-) 12 (-) <0.05
rs3130941 chr6:31197514 HCG27 [+25769bp] C - 12 C vs. G 0.192 (C) 0.242 (C) >1 (-) 27 (-) <0.05
rs150984561 chr6:31169477 HCG27 C - 12 A vs. G - - >1 (-) 22 (-) <0.05
rs9500880 chr6:31159728 HCG27 [-5809bp] C - 12 A vs. G - - >1 (-) 7 (-) <0.05
rs7774136 chr6:31196478 HCG27 [+24733bp] C - 12 C vs. G 0.058 (C) 0.05 (C) >1 (-) 13 (-) <0.05
rs9264020 chr6:31195476 HCG27 [+23731bp] C - 12 C vs. G 0.058 (G) 0.05 (G) <1 (-) 13 (-) <0.05
rs9264021 chr6:31195485 HCG27 [+23740bp] C - 12 T vs. C 0.058 (T) 0.05 (T) >1 (-) 13 (-) <0.05
rs3130408 chr6:31213791 HLA-C [-22735bp] C - 11 A vs. G 0.225 (G) 0.217 (G) <1 (-) 0 (-) <0.05
rs3095249 chr6:31209245 HLA-C [-27281bp] C - 12 T vs. C - - <1 (-) 0 (-) <0.05
rs114506115 chr6:31220426 HLA-C [-16100bp] C - 7 A vs. G 0.033 (A) - >1 (-) 26 (-) <0.05
rs3869114 chr6:31199466 HCG27 [+27721bp] C - 12 A vs. G 0.058 (A) 0.042 (A) >1 (-) 24 (-) <0.05
rs3869113 chr6:31199296 HCG27 [+27551bp] C - 12 A vs. G 0.05 (A) 0.05 (A) >1 (-) 10 (-) <0.05
rs115374779 chr6:31164727 HCG27 [-810bp] C - 12 T vs. C 0.033 (T) 0.092 (T) >1 (-) 21 (-) <0.05
rs114141192 chr6:31165843 HCG27 C - 12 T vs. C 0.033 (T) 0.092 (T) >1 (-) 21 (-) <0.05
rs4122190 chr6:31167852 HCG27 C - 12 A vs. G - 0.133 (G) >1 (-) 0 (-) <0.05
rs28483421 chr6:31167470 HCG27 C - 12 T vs. C - 0.133 (T) <1 (-) 0 (-) <0.05
rs3132500 chr6:31188611 HCG27 [+16866bp] C - 12 T vs. G - - >1 (-) 15 (-) <0.05
rs28749551 chr6:31163972 HCG27 [-1565bp] C - 12 C vs. G - - <1 (-) 44 (-) <0.05
rs3132497 chr6:31208591 HLA-C [-27935bp] C - 12 T vs. G 0.217 (G) 0.217 (G) <1 (-) 0 (-) <0.05
rs2394947 chr6:31221396 HLA-C [-15130bp] C - 6 A vs. G - 0.35 (A) >1 (-) 0 (-) <0.05
rs3132504 chr6:31178743 HCG27 [+6998bp] C - 12 T vs. G 0.2 (T) 0.158 (T) >1 (-) 27 (-) <0.05
rs3132501 chr6:31185977 HCG27 [+14232bp] C - 12 T vs. G 0.208 (T) 0.167 (T) >1 (-) 28 (-) <0.05
rs3130951 chr6:31186868 HCG27 [+15123bp] C - 12 T vs. C - - >1 (-) 28 (-) <0.05
rs9366770 chr6:31170228 HCG27 C - 12 C vs. G 0.358 (C) 0.467 (G) <1 (-) 3 (-) <0.05
rs3130950 chr6:31189952 HCG27 [+18207bp] C - 12 C vs. G - - >1 (-) 28 (-) <0.05
rs3130466 chr6:31179932 HCG27 [+8187bp] C - 12 C vs. G 0.192 (G) 0.158 (G) <1 (-) 26 (-) <0.05
rs6922077 chr6:31163791 HCG27 [-1746bp] C - 12 C vs. G 0.192 (C) 0.392 (C) <1 (-) 33 (-) <0.05
rs62987162 chr6:31167696 HCG27 C - 12 C vs. G - - <1 (-) 32 (-) <0.05
rs3130528 chr6:31199460 HCG27 [+27715bp] C - 12 T vs. C 0.192 (T) 0.167 (T) >1 (-) 29 (-) <0.05
rs3094193 chr6:31137774 POU5F1 C - 12 T vs. G 0.467 (G) 0.4 (G) <1 (-) 15 (-) <0.05
rs28749550 chr6:31159911 HCG27 [-5626bp] C - 12 A vs. G 0.175 (G) 0.25 (G) >1 (-) 40 (-) <0.05
rs3132508 chr6:31174796 HCG27 [+3051bp] C - 12 T vs. G - - <1 (-) 29 (-) <0.05
rs3130532 chr6:31208453 HLA-C [-28073bp] C - 12 A vs. G 0.208 (A) 0.15 (A) >1 (-) 29 (-) <0.05
rs3130518 chr6:31191709 HCG27 [+19964bp] C - 12 T vs. C - - >1 (-) 28 (-) <0.05
rs3130428 chr6:31219090 HLA-C [-17436bp] C - 8 A vs. G 0.217 (G) 0.183 (G) <1 (-) 0 (-) <0.05
rs3134753 chr6:31217479 HLA-C [-19047bp] C - 8 A vs. G - - >1 (-) 0 (-) <0.05
rs3130426 chr6:31218535 HLA-C [-17991bp] C - 8 A vs. C 0.208 (A) 0.183 (A) >1 (-) 0 (-) <0.05
rs915660 chr6:31143835 POU5F1 C - 12 C vs. G 0.175 (G) 0.375 (G) >1 (-) 39 (-) <0.05
rs3132533 chr6:31117578 CCHCR1 C - 12 A vs. G 0.458 (A) 0.433 (A) >1 (-) 16 (-) <0.05

Association studies for this region [+]