HCG27, chr6:31165537-31171745 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs6930643 chr6:31174035 HCG27 [+2290bp] All: C 103,235 14 C vs. T - - 0.92 (0.89-0.95) 19 (0-56) 1.23e-06
Meta_image?name=rs6930643

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3130945 chr6:31196295 HCG27 [+24550bp] C - 12 A vs. G 0.25 (G) 0.258 (G) >1 (-) 0 (-) <0.05
rs3130530 chr6:31205392 HLA-C [-31134bp] C - 12 A vs. G 0.225 (G) 0.175 (G) >1 (-) 0 (-) <0.05
rs3130524 chr6:31197729 HCG27 [+25984bp] C - 12 T vs. C 0.25 (C) 0.4 (C) >1 (-) 0 (-) <0.05
rs3130471 chr6:31197696 HCG27 [+25951bp] C - 12 T vs. G 0.25 (T) 0.375 (T) <1 (-) 0 (-) <0.05
rs3130942 chr6:31197293 HCG27 [+25548bp] C - 12 T vs. C 0.25 (T) 0.383 (T) <1 (-) 0 (-) <0.05
rs3130470 chr6:31197528 HCG27 [+25783bp] C - 12 A vs. G 0.25 (G) 0.358 (G) >1 (-) 0 (-) <0.05
rs3130713 chr6:31205617 HLA-C [-30909bp] C - 12 T vs. G 0.25 (T) 0.267 (T) <1 (-) 0 (-) <0.05
rs55898325 chr6:31120711 CCHCR1 C - 12 A vs. C 0.075 (A) 0.033 (A) >1 (-) 25 (-) <0.05
rs3130523 chr6:31197074 HCG27 [+25329bp] C - 12 T vs. C 0.25 (T) 0.317 (T) <1 (-) 0 (-) <0.05
rs3134777 chr6:31199900 HCG27 [+28155bp] C - 12 A vs. G 0.25 (A) 0.292 (A) <1 (-) 0 (-) <0.05
rs3130938 chr6:31198632 HCG27 [+26887bp] C - 12 T vs. G 0.25 (G) 0.383 (G) >1 (-) 0 (-) <0.05
rs3134778 chr6:31199781 HCG27 [+28036bp] C - 12 A vs. G 0.25 (A) - <1 (-) 0 (-) <0.05
rs3130937 chr6:31198660 HCG27 [+26915bp] C - 12 A vs. G 0.25 (G) 0.275 (G) >1 (-) 0 (-) <0.05
rs3095251 chr6:31195095 HCG27 [+23350bp] C - 12 A vs. T 0.25 (A) 0.233 (A) <1 (-) 0 (-) <0.05
rs17197024 chr6:31115965 CCHCR1 C - 12 T vs. C 0.033 (T) 0.025 (T) >1 (-) 0 (-) <0.05
rs2027937 chr6:31116502 CCHCR1 C - 12 T vs. C 0.075 (T) - >1 (-) 27 (-) <0.05
rs3132495 chr6:31208881 HLA-C [-27645bp] C - 12 A vs. T 0.225 (A) 0.175 (A) <1 (-) 0 (-) <0.05
rs3130944 chr6:31196671 HCG27 [+24926bp] C - 12 C vs. G 0.25 (G) 0.283 (G) >1 (-) 0 (-) <0.05
rs2394895 chr6:31206979 HLA-C [-29547bp] C - 12 T vs. C 0.225 (C) 0.175 (C) >1 (-) 0 (-) <0.05
rs3134781 chr6:31198067 HCG27 [+26322bp] C - 12 A vs. G - - <1 (-) 0 (-) <0.05
rs1841 chr6:31130760 TCF19 C - 12 A vs. G 0.075 (G) 0.025 (G) <1 (-) 25 (-) <0.05
rs2394894 chr6:31206920 HLA-C [-29606bp] C - 12 T vs. C 0.225 (C) 0.175 (C) >1 (-) 0 (-) <0.05
rs73728460 chr6:31219613 HLA-C [-16913bp] C - 3 T vs. C - 0.075 (T) >1 (-) 58 (-) <0.05
rs79433986 chr6:31219635 HLA-C [-16891bp] C - 3 A vs. G - - >1 (-) 58 (-) <0.05
rs3134784 chr6:31196935 HCG27 [+25190bp] C - 12 A vs. G - - <1 (-) 0 (-) <0.05
rs3130946 chr6:31196197 HCG27 [+24452bp] C - 12 T vs. C 0.25 (T) 0.242 (T) <1 (-) 0 (-) <0.05
rs885950 chr6:31140152 POU5F1 C - 12 A vs. C 0.417 (C) 0.35 (C) >1 (-) 16 (-) <0.05
rs9263872 chr6:31170608 HCG27 C - 12 T vs. C 0.358 (T) 0.5 (T) <1 (-) 0 (-) <0.05
rs3130934 chr6:31128552 TCF19 C - 12 A vs. C 0.35 (A) 0.442 (A) >1 (-) 0 (-) <0.05
rs3130473 chr6:31199208 HCG27 [+27463bp] C - 11 T vs. C 0.25 (T) 0.275 (T) <1 (-) 0 (-) <0.05
rs28360057 chr6:31155532 POU5F1 [+7024bp] C - 12 A vs. C 0.175 (C) 0.175 (C) >1 (-) 32 (-) <0.05
rs7742179 chr6:31159020 HCG27 [-6517bp] C - 12 A vs. T 0.308 (A) 0.342 (A) <1 (-) 0 (-) <0.05
rs10947144 chr6:31168777 HCG27 C - 12 C vs. G - - >1 (-) 0 (-) <0.05
rs7762933 chr6:31162520 HCG27 [-3017bp] C - 12 T vs. C 0.358 (C) 0.492 (C) >1 (-) 0 (-) <0.05
rs7743722 chr6:31163106 HCG27 [-2431bp] C - 12 C vs. G - - >1 (-) 0 (-) <0.05
rs2269711 chr6:31141612 POU5F1 C - 12 A vs. T 0.35 (A) 0.417 (A) >1 (-) 19 (-) <0.05
rs130075 chr6:31122502 CCHCR1 C - 12 T vs. C - 0.092 (T) >1 (-) 0 (-) <0.05
rs130071 chr6:31116210 CCHCR1 C - 12 A vs. G 0.283 (A) 0.05 (A) <1 (-) 0 (-) <0.05
rs3095247 chr6:31209389 HLA-C [-27137bp] C - 12 A vs. G - - <1 (-) 51 (-) <0.05
rs1265157 chr6:31142265 POU5F1 C - 12 C vs. G 0.325 (G) 0.325 (G) >1 (-) 0 (-) <0.05
rs60346131 chr6:31133009 TCF19 C - 13 C vs. G - - <1 (-) 0 (-) <0.05
rs62513968 chr6:31133037 TCF19 C - 13 A vs. G - - <1 (-) 0 (-) <0.05
rs17197422 chr6:31154447 POU5F1 [+5939bp] C - 12 A vs. G - - <1 (-) 24 (-) <0.05
rs3130517 chr6:31190303 HCG27 [+18558bp] C - 12 T vs. C 0.258 (C) 0.392 (C) >1 (-) 8 (-) <0.05
rs2106074 chr6:31133509 TCF19 C - 12 A vs. G 0.375 (G) 0.425 (G) <1 (-) 0 (-) <0.05
rs3130932 chr6:31133943 TCF19 C - 12 A vs. C 0.35 (C) 0.425 (C) <1 (-) 0 (-) <0.05
rs9264185 chr6:31219982 HLA-C [-16544bp] C - 10 A vs. G 0.267 (A) 0.167 (A) <1 (-) 0 (-) <0.05
rs2077010 chr6:31138377 POU5F1 C - 12 T vs. C - - <1 (-) 0 (-) <0.05
rs885951 chr6:31140091 POU5F1 C - 12 A vs. C 0.4 (A) 0.342 (A) <1 (-) 3 (-) >0.05
rs2394886 chr6:31194677 HCG27 [+22932bp] C - 12 A vs. G 0.225 (A) - <1 (-) 0 (-) >0.05

Association studies for this region [+]