HLA-B, chr6:31321649-31324965 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3997869 - HLA-B All: C 105,041 14 C vs. T - - 1.18 (1.13-1.24) 37 (0-67) 1.94e-11
Meta_image?name=rs3997869

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs36057735 chr6:31319923 HLA-B [-1726bp] C - 5 C vs. G 0.183 (G) 0.108 (G) >1 (-) 31 (-) <0.05
rs9265962 chr6:31315520 HLA-B [-6129bp] C - 5 A vs. T 0.425 (A) 0.333 (A) >1 (-) 47 (-) <0.05
rs9265572 chr6:31298681 HLA-B [-22968bp] C - 3 A vs. G 0.383 (G) 0.15 (G) <1 (-) 0 (-) <0.05
rs9265462 chr6:31296757 HLA-B [-24892bp] C - 4 A vs. G - - <1 (-) 45 (-) <0.05
rs2523579 chr6:31328517 HLA-B [+3552bp] C - 9 T vs. C 0.375 (T) 0.25 (T) >1 (-) 0 (-) <0.05
rs1634740 chr6:31283928 HLA-B [-37721bp] C - 4 T vs. C 0.5 (C) 0.308 (T) >1 (-) 0 (-) <0.05
rs4644109 chr6:31317992 HLA-B [-3657bp] C - 8 C vs. G 0.225 (C) 0.233 (C) <1 (-) 5 (-) <0.05
rs9394055 chr6:31272554 HLA-C [+32647bp] C - 11 A vs. G 0.075 (G) 0.267 (G) >1 (-) 24 (-) <0.05
rs1634739 chr6:31283932 HLA-B [-37717bp] C - 4 A vs. C 0.425 (A) 0.267 (A) <1 (-) 45 (-) <0.05
rs9265467 chr6:31296856 HLA-B [-24793bp] C - 4 T vs. C - - <1 (-) 47 (-) <0.05
rs9266052 chr6:31319080 HLA-B [-2569bp] C - 7 T vs. C 0.425 (C) 0.3 (C) <1 (-) 0 (-) <0.05
rs1634743 chr6:31283651 HLA-B [-37998bp] C - 4 T vs. G 0.425 (G) 0.267 (G) >1 (-) 47 (-) <0.05
rs4992474 chr6:31318933 HLA-B [-2716bp] C - 7 T vs. G 0.408 (T) 0.3 (T) >1 (-) 0 (-) <0.05
rs9264988 chr6:31283392 HLA-B [-38257bp] C - 4 T vs. C 0.492 (C) 0.292 (T) >1 (-) 0 (-) <0.05
rs1634783 chr6:31283604 HLA-B [-38045bp] C - 4 A vs. G 0.5 (A) 0.292 (G) <1 (-) 0 (-) <0.05
rs1634742 chr6:31283793 HLA-B [-37856bp] C - 4 T vs. C 0.392 (T) 0.292 (C) <1 (-) 0 (-) <0.05
rs73728881 chr6:31319079 HLA-B [-2570bp] C - 7 T vs. C 0.425 (C) 0.3 (C) <1 (-) 0 (-) <0.05
rs9265466 chr6:31296838 HLA-B [-24811bp] C - 4 A vs. T - - >1 (-) 47 (-) <0.05
rs2523616 chr6:31320562 HLA-B [-1087bp] C - 8 T vs. C 0.242 (T) 0.217 (T) >1 (-) 0 (-) <0.05
rs9264989 chr6:31283409 HLA-B [-38240bp] C - 4 T vs. G 0.425 (G) 0.267 (G) >1 (-) 47 (-) <0.05
rs1634746 chr6:31282777 HLA-B [-38872bp] C - 4 T vs. C 0.408 (T) 0.225 (T) <1 (-) 47 (-) <0.05
rs9266042 chr6:31318621 HLA-B [-3028bp] C - 7 A vs. T 0.425 (T) 0.308 (T) <1 (-) 0 (-) <0.05
rs9266054 chr6:31319109 HLA-B [-2540bp] C - 7 A vs. G 0.442 (A) 0.3 (A) >1 (-) 0 (-) <0.05
rs9266053 chr6:31319102 HLA-B [-2547bp] C - 7 C vs. G 0.417 (C) 0.317 (C) >1 (-) 0 (-) <0.05
rs1634747 chr6:31281876 HLA-B [-39773bp] C - 4 A vs. G 0.425 (A) 0.258 (A) <1 (-) 48 (-) <0.05
rs727847 chr6:31281573 HLA-B [-40076bp] C - 4 T vs. C 0.425 (C) 0.267 (C) >1 (-) 48 (-) <0.05
rs1634782 chr6:31283687 HLA-B [-37962bp] C - 4 A vs. G 0.492 (A) 0.292 (G) <1 (-) 0 (-) <0.05
rs2853988 chr6:31337170 RNU6-283P [-741bp] C - 12 A vs. T 0.475 (T) 0.458 (T) <1 (-) 0 (-) <0.05
rs9265999 chr6:31316650 HLA-B [-4999bp] C - 8 C vs. G 0.433 (G) 0.475 (C) <1 (-) 9 (-) <0.05
rs2253907 chr6:31336870 RNU6-283P [-1041bp] C - 12 T vs. C - - <1 (-) 0 (-) <0.05
rs1634752 chr6:31280942 HLA-B [-40707bp] C - 4 T vs. C 0.433 (T) 0.283 (T) <1 (-) 48 (-) <0.05
rs2523586 chr6:31327435 HLA-B [+2470bp] C - 7 T vs. G 0.3 (G) 0.15 (G) <1 (-) 0 (-) <0.05
rs2523638 chr6:31344273 RNU6-283P [+6256bp] C - 12 T vs. C 0.458 (T) 0.425 (T) >1 (-) 0 (-) <0.05
rs34219541 chr6:31312111 HLA-B [-9538bp] C - 3 T vs. C 0.225 (T) 0.233 (T) <1 (-) 0 (-) <0.05
rs34367999 chr6:31312123 HLA-B [-9526bp] C - 3 A vs. G 0.225 (A) 0.233 (A) <1 (-) 0 (-) <0.05
rs1005248 chr6:31280030 HLA-C [+40123bp] C - 4 A vs. G 0.433 (A) 0.267 (A) <1 (-) 49 (-) <0.05
rs34650856 chr6:31312094 HLA-B [-9555bp] C - 3 T vs. C 0.225 (T) 0.233 (T) <1 (-) 0 (-) <0.05
rs2523490 chr6:31348779 RNU6-283P [+10762bp] C - 12 A vs. T 0.292 (A) 0.108 (A) >1 (-) 23 (-) <0.05
rs34659389 chr6:31311835 HLA-B [-9814bp] C - 3 A vs. G 0.225 (A) 0.233 (A) <1 (-) 0 (-) <0.05
rs2905720 chr6:31344388 RNU6-283P [+6371bp] C - 12 C vs. G 0.367 (C) 0.392 (C) >1 (-) 0 (-) <0.05
rs2844552 chr6:31342741 RNU6-283P [+4724bp] C - 12 A vs. G 0.45 (G) 0.45 (G) <1 (-) 0 (-) <0.05
rs7764623 chr6:31279093 HLA-C [+39186bp] C - 10 A vs. G 0.05 (G) - <1 (-) 20 (-) <0.05
rs111364362 chr6:31276623 HLA-C [+36716bp] C - 5 A vs. G - 0.15 (G) <1 (-) 37 (-) <0.05
rs2523634 chr6:31344876 RNU6-283P [+6859bp] C - 12 A vs. G 0.442 (A) 0.433 (A) >1 (-) 0 (-) <0.05
rs3997983 chr6:31344471 RNU6-283P [+6454bp] C - 12 C vs. G 0.442 (C) 0.4 (C) >1 (-) 0 (-) <0.05
rs112457099 chr6:31362698 MICA [-8658bp] C - 8 T vs. G 0.075 (T) - <1 (-) 0 (-) <0.05
rs9265947 chr6:31315165 HLA-B [-6484bp] C - 5 T vs. C 0.45 (T) 0.325 (T) >1 (-) 47 (-) <0.05
rs2428484 chr6:31355813 MICA [-15543bp] C - 5 C vs. G 0.033 (G) 0.05 (G) >1 (-) 0 (-) <0.05
rs2596506 chr6:31318553 HLA-B [-3096bp] C - 9 T vs. C 0.383 (T) 0.392 (T) >1 (-) 0 (-) <0.05
rs9266267 chr6:31326027 HLA-B [+1062bp] C - 4 A vs. C 0.092 (C) 0.125 (C) <1 (-) 0 (-) <0.05

Association studies for this region [+]