HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2394957 chr6:31233521 HLA-C [-3005bp] C - 12 T vs. C 0.242 (T) 0.225 (T) >1 (-) 22 (-) <0.05
rs2394958 chr6:31233529 HLA-C [-2997bp] C - 12 T vs. C 0.233 (T) 0.225 (T) >1 (-) 21 (-) <0.05
rs1634739 chr6:31283932 HLA-B [-37717bp] C - 4 A vs. C 0.425 (A) 0.267 (A) <1 (-) 45 (-) <0.05
rs9264462 chr6:31231575 HLA-C [-4951bp] C - 11 A vs. G - - >1 (-) 26 (-) <0.05
rs9264497 chr6:31232769 HLA-C [-3757bp] C - 12 A vs. G 0.233 (G) 0.217 (G) <1 (-) 25 (-) <0.05
rs1634743 chr6:31283651 HLA-B [-37998bp] C - 4 T vs. G 0.425 (G) 0.267 (G) >1 (-) 47 (-) <0.05
rs9264988 chr6:31283392 HLA-B [-38257bp] C - 4 T vs. C 0.492 (C) 0.292 (T) >1 (-) 0 (-) <0.05
rs1634783 chr6:31283604 HLA-B [-38045bp] C - 4 A vs. G 0.5 (A) 0.292 (G) <1 (-) 0 (-) <0.05
rs1634742 chr6:31283793 HLA-B [-37856bp] C - 4 T vs. C 0.392 (T) 0.292 (C) <1 (-) 0 (-) <0.05
rs9264463 chr6:31231591 HLA-C [-4935bp] C - 11 T vs. C - - <1 (-) 26 (-) <0.05
rs9264989 chr6:31283409 HLA-B [-38240bp] C - 4 T vs. G 0.425 (G) 0.267 (G) >1 (-) 47 (-) <0.05
rs9264464 chr6:31231622 HLA-C [-4904bp] C - 11 C vs. G - - <1 (-) 25 (-) <0.05
rs1634746 chr6:31282777 HLA-B [-38872bp] C - 4 T vs. C 0.408 (T) 0.225 (T) <1 (-) 47 (-) <0.05
rs28367659 chr6:31268661 HLA-C [+28754bp] C - 12 A vs. G 0.275 (A) 0.325 (A) <1 (-) 0 (-) <0.05
rs1634747 chr6:31281876 HLA-B [-39773bp] C - 4 A vs. G 0.425 (A) 0.258 (A) <1 (-) 48 (-) <0.05
rs115899983 chr6:31233569 HLA-C [-2957bp] C - 3 T vs. C - - <1 (-) 0 (-) <0.05
rs73730307 chr6:31233543 HLA-C [-2983bp] C - 3 T vs. C - - >1 (-) 0 (-) <0.05
rs116509127 chr6:31233622 HLA-C [-2904bp] C - 3 A vs. G - - >1 (-) 0 (-) <0.05
rs28367644 chr6:31268324 HLA-C [+28417bp] C - 12 A vs. G - - >1 (-) 0 (-) <0.05
rs727847 chr6:31281573 HLA-B [-40076bp] C - 4 T vs. C 0.425 (C) 0.267 (C) >1 (-) 48 (-) <0.05
rs1634782 chr6:31283687 HLA-B [-37962bp] C - 4 A vs. G 0.492 (A) 0.292 (G) <1 (-) 0 (-) <0.05
rs1634752 chr6:31280942 HLA-B [-40707bp] C - 4 T vs. C 0.433 (T) 0.283 (T) <1 (-) 48 (-) <0.05
rs16899205 chr6:31266361 HLA-C [+26454bp] C - 12 A vs. G 0.292 (G) 0.35 (G) >1 (-) 0 (-) <0.05
rs2074488 chr6:31240431 HLA-C [+524bp] C - 10 T vs. G 0.133 (T) 0.233 (T) <1 (-) 24 (-) <0.05
rs9264448 chr6:31231142 HLA-C [-5384bp] C - 5 A vs. G - - <1 (-) 28 (-) <0.05
rs139416387 chr6:31213840 HLA-C [-22686bp] C - 7 T vs. C - - >1 (-) 0 (-) <0.05
rs1005248 chr6:31280030 HLA-C [+40123bp] C - 4 A vs. G 0.433 (A) 0.267 (A) <1 (-) 49 (-) <0.05
rs9264447 chr6:31231130 HLA-C [-5396bp] C - 4 A vs. C 0.283 (A) - >1 (-) 41 (-) <0.05
rs73730327 chr6:31234251 HLA-C [-2275bp] C - 4 A vs. T - - >1 (-) 0 (-) <0.05
rs114060342 chr6:31234130 HLA-C [-2396bp] C - 4 A vs. G - - <1 (-) 0 (-) <0.05
rs73730308 chr6:31233693 HLA-C [-2833bp] C - 4 T vs. C - - <1 (-) 0 (-) <0.05
rs115487681 chr6:31233663 HLA-C [-2863bp] C - 4 A vs. G - - <1 (-) 0 (-) <0.05
rs115493213 chr6:31233652 HLA-C [-2874bp] C - 4 A vs. G - - >1 (-) 0 (-) <0.05
rs116170779 chr6:31234138 HLA-C [-2388bp] C - 4 A vs. G - - <1 (-) 0 (-) <0.05
rs73730324 chr6:31234101 HLA-C [-2425bp] C - 4 T vs. G - - >1 (-) 0 (-) <0.05
rs73730329 chr6:31234423 HLA-C [-2103bp] C - 4 C vs. G - - <1 (-) 0 (-) <0.05
rs73730331 chr6:31234442 HLA-C [-2084bp] C - 4 C vs. G - - <1 (-) 0 (-) <0.05
rs73730328 chr6:31234283 HLA-C [-2243bp] C - 4 A vs. C - - >1 (-) 0 (-) <0.05
rs7764623 chr6:31279093 HLA-C [+39186bp] C - 10 A vs. G 0.05 (G) - <1 (-) 20 (-) <0.05
rs28367645 chr6:31268327 HLA-C [+28420bp] C - 12 A vs. C - - <1 (-) 0 (-) <0.05
rs7769211 chr6:31196018 HCG27 [+24273bp] C - 12 T vs. C - - >1 (-) 0 (-) <0.05
rs111364362 chr6:31276623 HLA-C [+36716bp] C - 5 A vs. G - 0.15 (G) <1 (-) 37 (-) <0.05
rs28367661 chr6:31268688 HLA-C [+28781bp] C - 12 A vs. T 0.292 (T) 0.35 (T) >1 (-) 0 (-) <0.05
rs28367634 chr6:31268016 HLA-C [+28109bp] C - 12 T vs. C - - >1 (-) 0 (-) <0.05
rs3132489 chr6:31242674 HLA-C [+2767bp] C - 12 T vs. C 0.483 (T) 0.475 (C) <1 (-) 0 (-) <0.05
rs2894206 chr6:31251558 HLA-C [+11651bp] C - 12 A vs. T - - >1 (-) 0 (-) <0.05
rs9264548 chr6:31234771 HLA-C [-1755bp] C - 11 A vs. G 0.242 (A) 0.233 (A) >1 (-) 14 (-) <0.05
rs3095246 chr6:31213879 HLA-C [-22647bp] C - 11 T vs. C 0.183 (T) 0.192 (T) >1 (-) 0 (-) <0.05
rs7769059 chr6:31195996 HCG27 [+24251bp] C - 12 A vs. G - - <1 (-) 0 (-) <0.05
rs7768955 chr6:31195979 HCG27 [+24234bp] C - 12 A vs. G - - <1 (-) 0 (-) <0.05

Association studies for this region [+]