HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs4543368 chr6:31266777 HLA-C [+26870bp] All: C 103,235 14 A vs. G 0.208 (A) 0.325 (A) 0.93 (0.89-0.96) 7 (0-58) 1.47e-04
rs4454129 chr6:31266778 HLA-C [+26871bp] All: C 103,235 14 T vs. C 0.208 (T) 0.325 (T) 0.93 (0.89-0.96) 7 (0-58) 1.48e-04
rs28367612 chr6:31267167 HLA-C [+27260bp] All: C 103,235 14 A vs. G - - 1.09 (1.04-1.13) 6 (0-58) 1.51e-04
rs28367613 chr6:31267172 HLA-C [+27265bp] All: C 103,235 14 T vs. C - - 1.09 (1.04-1.13) 6 (0-58) 1.51e-04
rs7754903 chr6:31254496 HLA-C [+14589bp] All: C 103,235 14 T vs. G 0.275 (T) 0.258 (T) 0.94 (0.90-0.97) 6 (0-58) 1.72e-04
rs2074489 chr6:31240128 HLA-C [+221bp] All: C 92,381 12 T vs. C 0.233 (T) 0.233 (T) 0.92 (0.88-0.96) 9 (0-47) 1.97e-04
rs3130430 chr6:31219180 HLA-C [-17346bp] C - 10 A vs. C 0.417 (A) 0.367 (A) >1 (-) 0 (-) <0.05
rs9264188 chr6:31220109 HLA-C [-16417bp] C - 9 T vs. C 0.417 (C) 0.45 (T) <1 (-) 4 (-) <0.05
rs6917363 chr6:31247169 HLA-C [+7262bp] All: C 103,235 14 G vs. A 0.442 (G) 0.442 (A) 1.06 (1.03-1.10) 0 (0-23) 2.16e-04
rs3134752 chr6:31217539 HLA-C [-18987bp] C - 10 C vs. G 0.408 (C) 0.375 (C) >1 (-) 1 (-) <0.05
rs3134763 chr6:31210774 HLA-C [-25752bp] C - 12 A vs. C 0.408 (A) 0.383 (A) >1 (-) 18 (-) <0.05
rs6457372 chr6:31247121 HLA-C [+7214bp] All: C 103,235 14 A vs. G 0.433 (A) 0.45 (G) 1.06 (1.03-1.10) 0 (0-21) 2.41e-04
rs34837204 chr6:31188436 HCG27 [+16691bp] All: C 103,235 14 C vs. T - - 1.11 (1.05-1.18) 37 (0-66) 2.45e-04
rs9461688 chr6:31271716 HLA-C [+31809bp] All: C 103,235 14 G vs. A 0.258 (G) 0.258 (G) 0.94 (0.90-0.97) 10 (0-48) 2.45e-04
rs9468935 chr6:31269553 HLA-C [+29646bp] All: C 103,235 14 T vs. C 0.258 (T) 0.25 (T) 0.94 (0.90-0.97) 7 (0-44) 2.45e-04
rs2894188 chr6:31215331 HLA-C [-21195bp] C - 10 T vs. C 0.408 (T) - >1 (-) 0 (-) <0.05
rs11967600 chr6:31199573 HCG27 [+27828bp] All: C 103,235 14 T vs. C 0.133 (T) 0.125 (T) 0.90 (0.85-0.95) 37 (0-66) 2.52e-04
rs3130540 chr6:31219862 HLA-C [-16664bp] C - 10 T vs. C 0.425 (T) 0.45 (C) >1 (-) 0 (-) <0.05
rs9264179 chr6:31219869 HLA-C [-16657bp] C - 10 T vs. C 0.442 (T) 0.442 (C) >1 (-) 0 (-) <0.05
rs9264187 chr6:31220027 HLA-C [-16499bp] C - 9 T vs. C 0.417 (T) 0.433 (C) >1 (-) 0 (-) <0.05
rs3130423 chr6:31218208 HLA-C [-18318bp] C - 10 A vs. G 0.442 (A) 0.45 (A) >1 (-) 7 (-) <0.05
rs2394908 chr6:31217973 HLA-C [-18553bp] C - 10 T vs. C 0.433 (C) 0.467 (C) <1 (-) 0 (-) <0.05
rs3132494 chr6:31210691 HLA-C [-25835bp] C - 12 A vs. G 0.433 (A) 0.467 (A) >1 (-) 22 (-) <0.05
rs28397293 chr6:31205004 HLA-C [-31522bp] All: C 103,235 14 C vs. T - - 1.11 (1.05-1.18) 38 (0-67) 2.76e-04
rs3130425 chr6:31218327 HLA-C [-18199bp] C - 10 T vs. C 0.433 (T) 0.45 (T) >1 (-) 3 (-) <0.05
rs2844608 chr6:31247414 HLA-C [+7507bp] All: C 103,235 14 T vs. C 0.375 (T) 0.358 (T) 0.94 (0.91-0.97) 0 (0-39) 2.82e-04
rs3130537 chr6:31210796 HLA-C [-25730bp] C - 12 A vs. G 0.433 (A) 0.483 (A) >1 (-) 21 (-) <0.05
rs3134765 chr6:31210577 HLA-C [-25949bp] C - 12 T vs. C 0.433 (T) 0.467 (T) >1 (-) 22 (-) <0.05
rs28480108 chr6:31210532 HLA-C [-25994bp] C - 12 A vs. G 0.408 (A) 0.308 (A) >1 (-) 15 (-) <0.05
rs2394905 chr6:31216507 HLA-C [-20019bp] C - 10 A vs. C - - >1 (-) 3 (-) <0.05
rs3130412 chr6:31216262 HLA-C [-20264bp] C - 10 A vs. G 0.433 (G) 0.467 (G) <1 (-) 2 (-) <0.05
rs3130419 chr6:31217741 HLA-C [-18785bp] C - 10 T vs. C 0.433 (T) 0.483 (T) >1 (-) 3 (-) <0.05
rs2894189 chr6:31217815 HLA-C [-18711bp] C - 10 A vs. C 0.433 (A) 0.467 (A) >1 (-) 3 (-) <0.05
rs2844605 chr6:31248591 HLA-C [+8684bp] All: C 103,235 14 C vs. A 0.458 (C) 0.483 (C) 0.94 (0.91-0.97) 0 (0-52) 3.14e-04
rs2394907 chr6:31217943 HLA-C [-18583bp] C - 10 T vs. C 0.433 (C) 0.417 (T) <1 (-) 5 (-) <0.05
rs3130712 chr6:31209510 HLA-C [-27016bp] C - 12 T vs. C 0.408 (C) 0.375 (C) <1 (-) 30 (-) <0.05
rs3130538 chr6:31214652 HLA-C [-21874bp] C - 10 A vs. G 0.433 (A) 0.458 (A) >1 (-) 0 (-) <0.05
rs3130427 chr6:31218984 HLA-C [-17542bp] C - 10 A vs. G 0.433 (A) 0.467 (A) >1 (-) 1 (-) <0.05
rs28749560 chr6:31216314 HLA-C [-20212bp] All: C 84,098 10 C vs. T 0.167 (C) 0.233 (C) 0.88 (0.82-0.94) 30 (0-67) 3.64e-04
rs28397288 chr6:31197143 HCG27 [+25398bp] All: C 103,235 14 C vs. A 0.358 (C) 0.308 (C) 0.94 (0.91-0.97) 3 (0-57) 3.83e-04
rs3134764 chr6:31210731 HLA-C [-25795bp] C - 12 C vs. G 0.408 (G) 0.308 (G) <1 (-) 17 (-) <0.05
rs3134750 chr6:31218087 HLA-C [-18439bp] C - 10 A vs. G 0.417 (A) 0.3 (A) >1 (-) 0 (-) <0.05
rs6457358 chr6:31239999 HLA-C [+92bp] C - 9 A vs. T 0.042 (T) 0.042 (T) <1 (-) 44 (-) <0.05
rs3134746 chr6:31220752 HLA-C [-15774bp] All: C 91,003 11 C vs. T 0.258 (C) 0.333 (C) 1.10 (1.04-1.16) 0 (0-34) 3.96e-04
rs3134766 chr6:31210462 HLA-C [-26064bp] C - 12 T vs. C 0.4 (T) 0.325 (T) >1 (-) 24 (-) <0.05
rs114070457 chr6:31206695 HLA-C [-29831bp] C - 12 T vs. C 0.033 (T) 0.017 (T) >1 (-) 0 (-) <0.05
rs9264224 chr6:31222019 HLA-C [-14507bp] C - 4 T vs. C - - <1 (-) 0 (-) <0.05
rs2394903 chr6:31215005 HLA-C [-21521bp] C - 10 T vs. C 0.458 (T) 0.467 (T) >1 (-) 6 (-) <0.05
rs3130410 chr6:31215006 HLA-C [-21520bp] C - 10 A vs. G 0.467 (G) 0.467 (G) <1 (-) 6 (-) <0.05
rs116135181 chr6:31207822 HLA-C [-28704bp] C - 12 A vs. G - - >1 (-) 0 (-) <0.05

Association studies for this region [+]