HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
Meta_image?name=rs2853923

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2524078 chr6:31242649 HLA-C [+2742bp] C - 12 A vs. G 0.158 (G) - >1 (-) 3 (-) >0.05
rs28360998 chr6:31189094 HCG27 [+17349bp] C - 12 T vs. C 0.142 (T) - <1 (-) 0 (-) >0.05
rs28744269 chr6:31189006 HCG27 [+17261bp] C - 12 A vs. G 0.142 (G) - >1 (-) 0 (-) >0.05
rs9264903 chr6:31272507 HLA-C [+32600bp] C - 12 A vs. G 0.15 (A) 0.083 (A) <1 (-) 0 (-) >0.05
rs9264894 chr6:31272322 HLA-C [+32415bp] C - 12 T vs. C 0.15 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs9264796 chr6:31270311 HLA-C [+30404bp] C - 12 A vs. G 0.15 (A) - <1 (-) 0 (-) >0.05
rs9264869 chr6:31271630 HLA-C [+31723bp] C - 12 A vs. G 0.15 (G) 0.092 (G) >1 (-) 0 (-) >0.05
rs9264870 chr6:31271662 HLA-C [+31755bp] C - 12 A vs. G 0.15 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs28744267 chr6:31188745 HCG27 [+17000bp] C - 12 A vs. T 0.142 (T) - >1 (-) 0 (-) >0.05
rs9264880 chr6:31271852 HLA-C [+31945bp] C - 12 T vs. C 0.15 (C) 0.092 (C) >1 (-) 0 (-) >0.05
rs9264797 chr6:31270316 HLA-C [+30409bp] C - 12 A vs. G 0.15 (G) - >1 (-) 0 (-) >0.05
rs2524086 chr6:31241311 HLA-C [+1404bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs2508006 chr6:31273562 HLA-C [+33655bp] C - 12 T vs. C 0.15 (C) 0.092 (C) >1 (-) 0 (-) >0.05
rs9264878 chr6:31271761 HLA-C [+31854bp] C - 12 T vs. C 0.15 (T) 0.067 (T) <1 (-) 0 (-) >0.05
rs115616450 chr6:31204186 HLA-C [-32340bp] C - 10 A vs. C 0.042 (A) - <1 (-) 0 (-) >0.05
rs2844602 chr6:31251576 HLA-C [+11669bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs9264849 chr6:31271226 HLA-C [+31319bp] C - 12 T vs. C 0.15 (C) 0.092 (C) >1 (-) 0 (-) >0.05
rs9264899 chr6:31272421 HLA-C [+32514bp] C - 12 T vs. C 0.158 (C) 0.083 (C) >1 (-) 0 (-) >0.05
rs2524064 chr6:31247817 HLA-C [+7910bp] C - 12 A vs. G 0.15 (A) - <1 (-) 0 (-) >0.05
rs9264900 chr6:31272447 HLA-C [+32540bp] C - 12 T vs. C 0.142 (T) 0.083 (T) <1 (-) 0 (-) >0.05
rs9264901 chr6:31272490 HLA-C [+32583bp] C - 12 T vs. C 0.158 (C) - >1 (-) 0 (-) >0.05
rs9264911 chr6:31272665 HLA-C [+32758bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs2524151 chr6:31261959 HLA-C [+22052bp] C - 12 A vs. G 0.15 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs1005249 chr6:31279326 HLA-C [+39419bp] C - 8 T vs. C 0.167 (T) - <1 (-) 0 (-) >0.05
rs9264891 chr6:31272156 HLA-C [+32249bp] C - 12 T vs. C 0.15 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs9264917 chr6:31272808 HLA-C [+32901bp] C - 12 A vs. G 0.15 (G) 0.092 (G) >1 (-) 0 (-) >0.05
rs9264931 chr6:31274196 HLA-C [+34289bp] C - 12 T vs. C 0.142 (C) 0.092 (C) >1 (-) 0 (-) >0.05
rs149645945 chr6:31188102 HCG27 [+16357bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs2524133 chr6:31264822 HLA-C [+24915bp] C - 12 T vs. C 0.15 (T) 0.083 (T) <1 (-) 0 (-) >0.05
rs2524077 chr6:31243603 HLA-C [+3696bp] C - 12 T vs. C 0.15 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs28744257 chr6:31186904 HCG27 [+15159bp] C - 12 A vs. G 0.142 (G) - >1 (-) 0 (-) >0.05
rs9264930 chr6:31274184 HLA-C [+34277bp] C - 12 T vs. C 0.142 (T) - <1 (-) 0 (-) >0.05
rs2853949 chr6:31241664 HLA-C [+1757bp] C - 12 A vs. G 0.158 (A) - <1 (-) 0 (-) >0.05
rs2524154 chr6:31261173 HLA-C [+21266bp] C - 12 T vs. C 0.15 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs117116032 chr6:31252909 HLA-C [+13002bp] C - 3 C vs. G - 0.067 (C) >1 (-) 0 (-) >0.05
rs10456394 chr6:31188200 HCG27 [+16455bp] C - 12 T vs. G 0.142 (G) - >1 (-) 0 (-) >0.05
rs28744265 chr6:31188315 HCG27 [+16570bp] C - 12 A vs. C 0.142 (C) - >1 (-) 0 (-) >0.05
rs28744256 chr6:31186883 HCG27 [+15138bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs9264799 chr6:31270392 HLA-C [+30485bp] C - 12 A vs. G 0.142 (G) - >1 (-) 0 (-) >0.05
rs1639114 chr6:31219224 HLA-C [-17302bp] C - 9 A vs. C - - >1 (-) 0 (-) >0.05
rs2524160 chr6:31259854 HLA-C [+19947bp] C - 12 A vs. G 0.15 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs9264884 chr6:31271921 HLA-C [+32014bp] C - 12 T vs. C 0.15 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs9264922 chr6:31273155 HLA-C [+33248bp] C - 12 T vs. C 0.15 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs9264927 chr6:31273422 HLA-C [+33515bp] C - 12 T vs. C 0.15 (C) 0.092 (C) >1 (-) 0 (-) >0.05
rs28361002 chr6:31189543 HCG27 [+17798bp] C - 12 A vs. G 0.133 (G) - >1 (-) 0 (-) >0.05
rs75120303 chr6:31199165 HCG27 [+27420bp] C - 10 A vs. G 0.025 (A) 0.1 (A) <1 (-) 0 (-) >0.05
rs9264929 chr6:31274137 HLA-C [+34230bp] C - 12 A vs. G 0.142 (G) - >1 (-) 0 (-) >0.05
rs2524148 chr6:31262770 HLA-C [+22863bp] C - 12 T vs. G 0.15 (G) 0.092 (G) >1 (-) 0 (-) >0.05
rs28361001 chr6:31189521 HCG27 [+17776bp] C - 12 C vs. G - - >1 (-) 0 (-) >0.05
rs9264915 chr6:31272705 HLA-C [+32798bp] C - 12 A vs. G 0.142 (G) - >1 (-) 0 (-) >0.05

Association studies for this region [+]