HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
Meta_image?name=rs2853923

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2524111 chr6:31231784 HLA-C [-4742bp] C - 6 A vs. T 0.233 (T) 0.042 (T) >1 (-) 37 (-) >0.05
rs1618199 chr6:31275850 HLA-C [+35943bp] C - 11 A vs. G 0.183 (A) 0.092 (A) >1 (-) 6 (-) >0.05
rs2844600 chr6:31253771 HLA-C [+13864bp] C - 12 T vs. G 0.15 (T) 0.092 (T) <1 (-) 0 (-) >0.05
rs28744264 chr6:31188070 HCG27 [+16325bp] C - 12 A vs. C - - <1 (-) 0 (-) >0.05
rs2253842 chr6:31251418 HLA-C [+11511bp] C - 12 A vs. G 0.15 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs57714246 chr6:31218939 HLA-C [-17587bp] C - 5 A vs. G - - <1 (-) 54 (-) >0.05
rs13208617 chr6:31248819 HLA-C [+8912bp] C - 12 T vs. C 0.083 (T) 0.058 (T) <1 (-) 26 (-) >0.05
rs2524132 chr6:31264912 HLA-C [+25005bp] C - 12 A vs. G 0.15 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs2853925 chr6:31264922 HLA-C [+25015bp] C - 12 A vs. G 0.15 (G) 0.092 (G) >1 (-) 0 (-) >0.05
rs28367683 chr6:31270817 HLA-C [+30910bp] C - 11 T vs. C - - <1 (-) 0 (-) >0.05
rs2524145 chr6:31268747 HLA-C [+28840bp] C - 12 A vs. C 0.15 (C) - >1 (-) 0 (-) >0.05
rs9264939 chr6:31274289 HLA-C [+34382bp] C - 12 A vs. G 0.175 (A) 0.1 (A) >1 (-) 7 (-) >0.05
rs13203895 chr6:31244082 HLA-C [+4175bp] C - 12 T vs. C 0.083 (T) 0.058 (T) <1 (-) 24 (-) >0.05
rs144184221 chr6:31207991 HLA-C [-28535bp] C - 10 A vs. T - - >1 (-) 0 (-) >0.05
rs79285736 chr6:31209640 HLA-C [-26886bp] C - 10 T vs. C - 0.092 (T) <1 (-) 0 (-) >0.05
rs10456057 chr6:31245534 HLA-C [+5627bp] C - 12 A vs. G - - >1 (-) 25 (-) >0.05
rs1859244 chr6:31268106 HLA-C [+28199bp] C - 12 A vs. G 0.158 (G) - >1 (-) 0 (-) >0.05
rs56042166 chr6:31262024 HLA-C [+22117bp] C - 12 A vs. G 0.067 (G) 0.117 (G) <1 (-) 26 (-) >0.05
rs115330968 chr6:31246225 HLA-C [+6318bp] C - 7 T vs. C 0.025 (C) 0.017 (C) >1 (-) 48 (-) >0.05
rs9264579 chr6:31235746 HLA-C [-780bp] C - 5 A vs. G 0.5 (A) 0.375 (A) <1 (-) 0 (-) >0.05
rs1634786 chr6:31280592 HLA-C [+40685bp] C - 7 A vs. G 0.15 (G) - >1 (-) 0 (-) >0.05
rs7759127 chr6:31240988 HLA-C [+1081bp] C - 12 T vs. G 0.15 (G) 0.092 (G) >1 (-) 0 (-) >0.05
rs3130474 chr6:31199256 HCG27 [+27511bp] C - 12 T vs. C 0.308 (T) 0.408 (T) <1 (-) 32 (-) >0.05
rs2524144 chr6:31263350 HLA-C [+23443bp] C - 12 A vs. G 0.15 (A) 0.083 (A) <1 (-) 0 (-) >0.05
rs115710087 chr6:31240614 HLA-C [+707bp] C - 6 T vs. C 0.025 (T) - <1 (-) 36 (-) >0.05
rs2524138 chr6:31264171 HLA-C [+24264bp] C - 12 T vs. C 0.15 (C) 0.092 (C) >1 (-) 0 (-) >0.05
rs3132480 chr6:31274677 HLA-C [+34770bp] C - 12 T vs. G 0.15 (G) - >1 (-) 0 (-) >0.05
rs3130935 chr6:31198786 HCG27 [+27041bp] C - 12 A vs. G 0.308 (G) 0.392 (G) >1 (-) 29 (-) >0.05
rs12192256 chr6:31242585 HLA-C [+2678bp] C - 12 A vs. G 0.1 (A) - <1 (-) 0 (-) >0.05
rs78111134 chr6:31247787 HLA-C [+7880bp] C - 3 T vs. C - - >1 (-) 50 (-) >0.05
rs9264938 chr6:31274269 HLA-C [+34362bp] C - 12 A vs. T 0.183 (A) 0.108 (A) >1 (-) 9 (-) >0.05
rs9264937 chr6:31274267 HLA-C [+34360bp] C - 12 C vs. G 0.183 (G) 0.1 (G) <1 (-) 9 (-) >0.05
rs2853915 chr6:31275289 HLA-C [+35382bp] C - 11 A vs. C 0.342 (C) 0.1 (C) >1 (-) 31 (-) >0.05
rs9264947 chr6:31274647 HLA-C [+34740bp] C - 12 A vs. G 0.15 (A) - <1 (-) 0 (-) >0.05
rs3094691 chr6:31274693 HLA-C [+34786bp] C - 11 A vs. G 0.425 (A) 0.375 (A) >1 (-) 0 (-) >0.05
rs2524081 chr6:31242083 HLA-C [+2176bp] C - 12 C vs. G 0.142 (C) - <1 (-) 0 (-) >0.05
rs3134780 chr6:31198366 HCG27 [+26621bp] C - 12 A vs. G 0.292 (A) 0.4 (A) <1 (-) 33 (-) >0.05
rs116392715 chr6:31188522 HCG27 [+16777bp] C - 12 A vs. G 0.017 (A) - >1 (-) 0 (-) >0.05
rs115971093 chr6:31262439 HLA-C [+22532bp] C - 6 A vs. G 0.017 (A) - <1 (-) 53 (-) >0.05
rs9264039 chr6:31196591 HCG27 [+24846bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs35891864 chr6:31191099 HCG27 [+19354bp] C - 12 A vs. G - - <1 (-) 6 (-) >0.05
rs28744268 chr6:31188778 HCG27 [+17033bp] C - 12 C vs. G 0.142 (C) - <1 (-) 0 (-) >0.05
rs9264967 chr6:31277740 HLA-C [+37833bp] C - 10 A vs. G 0.15 (G) - >1 (-) 0 (-) >0.05
rs16899208 chr6:31267496 HLA-C [+27589bp] C - 12 A vs. G - - >1 (-) 0 (-) >0.05
rs28744260 chr6:31187525 HCG27 [+15780bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs13214872 chr6:31255008 HLA-C [+15101bp] C - 12 C vs. G 0.075 (G) 0.058 (G) >1 (-) 25 (-) >0.05
rs28367682 chr6:31269710 HLA-C [+29803bp] C - 11 A vs. G 0.042 (A) - <1 (-) 0 (-) >0.05
rs2853952 chr6:31235869 HLA-C [-657bp] C - 6 T vs. C 0.233 (C) 0.042 (C) >1 (-) 41 (-) >0.05
rs12191877 chr6:31252925 HLA-C [+13018bp] C - 12 T vs. C 0.083 (T) 0.058 (T) <1 (-) 24 (-) >0.05
rs7767978 chr6:31202486 HCG27 [+30741bp] C - 12 T vs. C 0.233 (T) 0.292 (T) >1 (-) 51 (-) >0.05

Association studies for this region [+]