HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs73405036 chr6:31214171 HLA-C [-22355bp] C - 6 A vs. G 0.017 (A) - <1 (-) 0 (-) >0.05
rs114707980 chr6:31196850 HCG27 [+25105bp] C - 12 A vs. G 0.017 (A) - >1 (-) 0 (-) >0.05
rs78401918 chr6:31209151 HLA-C [-27375bp] C - 10 C vs. G - 0.1 (G) >1 (-) 0 (-) >0.05
rs116975314 chr6:31209541 HLA-C [-26985bp] C - 3 A vs. T - 0.058 (A) >1 (-) 0 (-) >0.05
rs74394074 chr6:31209068 HLA-C [-27458bp] C - 10 A vs. T 0.025 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs2894184 chr6:31202577 HCG27 [+30832bp] C - 12 A vs. G 0.025 (A) - >1 (-) 0 (-) >0.05
rs73728462 chr6:31219850 HLA-C [-16676bp] C - 5 C vs. G - - >1 (-) 53 (-) >0.05
rs28732116 chr6:31263587 HLA-C [+23680bp] C - 12 T vs. G 0.15 (G) 0.183 (G) <1 (-) 0 (-) >0.05
rs116669563 chr6:31198515 HCG27 [+26770bp] C - 12 A vs. G 0.025 (A) - >1 (-) 0 (-) >0.05
rs2394887 chr6:31194711 HCG27 [+22966bp] C - 12 T vs. G 0.158 (T) 0.075 (T) <1 (-) 10 (-) >0.05
rs13191343 chr6:31241109 HLA-C [+1202bp] C - 12 T vs. C 0.033 (T) 0.083 (T) <1 (-) 18 (-) >0.05
rs111423325 chr6:31208969 HLA-C [-27557bp] C - 10 A vs. T 0.025 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs2394966 chr6:31263911 HLA-C [+24004bp] C - 12 T vs. C 0.083 (T) 0.075 (T) <1 (-) 10 (-) >0.05
rs28732112 chr6:31263403 HLA-C [+23496bp] C - 12 T vs. G 0.15 (G) 0.192 (G) <1 (-) 0 (-) >0.05
rs9468928 chr6:31263043 HLA-C [+23136bp] C - 12 A vs. G 0.15 (G) 0.167 (G) <1 (-) 0 (-) >0.05
rs28732115 chr6:31263536 HLA-C [+23629bp] C - 12 C vs. G 0.15 (C) 0.183 (C) >1 (-) 0 (-) >0.05
rs145012831 chr6:31187330 HCG27 [+15585bp] C - 10 A vs. G - - <1 (-) 0 (-) >0.05
rs6904670 chr6:31192797 HCG27 [+21052bp] C - 12 A vs. G 0.4 (G) 0.3 (G) <1 (-) 18 (-) >0.05
rs6904669 chr6:31192796 HCG27 [+21051bp] C - 12 A vs. G 0.392 (G) 0.3 (G) <1 (-) 18 (-) >0.05
rs13207315 chr6:31241127 HLA-C [+1220bp] C - 12 T vs. C 0.05 (C) 0.125 (C) >1 (-) 19 (-) >0.05
rs2853924 chr6:31265146 HLA-C [+25239bp] C - 11 A vs. T 0.15 (T) 0.092 (T) >1 (-) 0 (-) >0.05
rs2524063 chr6:31248155 HLA-C [+8248bp] C - 12 A vs. G 0.15 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs2524104 chr6:31233906 HLA-C [-2620bp] C - 4 A vs. G 0.133 (A) 0.058 (A) >1 (-) 6 (-) >0.05
rs28744262 chr6:31187582 HCG27 [+15837bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs114108198 chr6:31252033 HLA-C [+12126bp] C - 11 T vs. C 0.033 (T) - <1 (-) 0 (-) >0.05
rs28744261 chr6:31187577 HCG27 [+15832bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs7751729 chr6:31271936 HLA-C [+32029bp] C - 11 T vs. C 0.067 (T) 0.075 (T) <1 (-) 18 (-) >0.05
rs13200073 chr6:31271008 HLA-C [+31101bp] C - 11 T vs. C 0.083 (T) 0.075 (T) <1 (-) 19 (-) >0.05
rs3130526 chr6:31198043 HCG27 [+26298bp] C - 12 T vs. C - - >1 (-) 36 (-) >0.05
rs13203722 chr6:31240771 HLA-C [+864bp] C - 12 T vs. C - 0.117 (C) >1 (-) 17 (-) >0.05
rs28367585 chr6:31245223 HLA-C [+5316bp] C - 12 T vs. G 0.042 (G) - <1 (-) 0 (-) >0.05
rs13218306 chr6:31240932 HLA-C [+1025bp] C - 12 A vs. C 0.075 (A) - <1 (-) 16 (-) >0.05
rs6931569 chr6:31267117 HLA-C [+27210bp] C - 12 A vs. G - - >1 (-) 27 (-) >0.05
rs2248880 chr6:31233510 HLA-C [-3016bp] C - 6 T vs. C 0.233 (C) 0.058 (C) >1 (-) 38 (-) >0.05
rs9468934 chr6:31269029 HLA-C [+29122bp] C - 12 A vs. G 0.083 (A) 0.075 (A) <1 (-) 10 (-) >0.05
rs1618113 chr6:31284762 HLA-B [-36887bp] C - 4 T vs. C 0.15 (T) - <1 (-) 0 (-) >0.05
rs9380237 chr6:31264392 HLA-C [+24485bp] C - 12 A vs. G 0.183 (A) 0.35 (A) <1 (-) 22 (-) >0.05
rs56210254 chr6:31196640 HCG27 [+24895bp] C - 12 A vs. G 0.158 (G) 0.075 (G) >1 (-) 13 (-) >0.05
rs9264077 chr6:31200838 HCG27 [+29093bp] C - 12 A vs. G 0.183 (A) 0.108 (A) >1 (-) 0 (-) >0.05
rs112815193 chr6:31196390 HCG27 [+24645bp] C - 12 A vs. G 0.158 (A) 0.125 (A) <1 (-) 12 (-) >0.05
rs1005598 chr6:31276760 HLA-C [+36853bp] C - 10 T vs. C 0.475 (T) 0.317 (T) <1 (-) 0 (-) >0.05
rs13216197 chr6:31271018 HLA-C [+31111bp] C - 11 T vs. C 0.075 (C) 0.075 (C) >1 (-) 17 (-) >0.05
rs3869118 chr6:31206136 HLA-C [-30390bp] C - 12 C vs. G 0.158 (C) - <1 (-) 15 (-) >0.05
rs2524079 chr6:31242174 HLA-C [+2267bp] C - 12 A vs. G 0.392 (A) 0.25 (A) >1 (-) 0 (-) >0.05
rs371441 chr6:31285027 HLA-B [-36622bp] C - 4 A vs. G 0.15 (G) - >1 (-) 0 (-) >0.05
rs9264082 chr6:31201514 HCG27 [+29769bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs1634791 chr6:31276777 HLA-C [+36870bp] C - 10 A vs. G 0.467 (A) 0.3 (A) <1 (-) 0 (-) >0.05
rs6913377 chr6:31243495 HLA-C [+3588bp] C - 12 A vs. G 0.042 (A) - >1 (-) 0 (-) >0.05
rs12192286 chr6:31242845 HLA-C [+2938bp] C - 12 T vs. C 0.083 (T) 0.125 (T) <1 (-) 19 (-) >0.05
rs3888070 chr6:31231644 HLA-C [-4882bp] C - 3 C vs. G 0.392 (G) - >1 (-) 74 (-) >0.05

Association studies for this region [+]