HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs1793892 chr6:31221351 HLA-C [-15175bp] C - 4 T vs. C 0.133 (C) - <1 (-) 29 (-) >0.05
rs13191519 chr6:31265752 HLA-C [+25845bp] C - 12 T vs. C 0.083 (C) 0.058 (C) >1 (-) 27 (-) >0.05
rs9264768 chr6:31250988 HLA-C [+11081bp] C - 12 T vs. C 0.117 (C) - >1 (-) 0 (-) >0.05
rs1634789 chr6:31277087 HLA-C [+37180bp] C - 10 A vs. G 0.475 (G) 0.308 (G) >1 (-) 0 (-) >0.05
rs12205435 chr6:31242554 HLA-C [+2647bp] C - 12 A vs. C 0.05 (C) - >1 (-) 8 (-) >0.05
rs9461689 chr6:31277033 HLA-C [+37126bp] C - 8 A vs. T 0.192 (T) 0.167 (T) <1 (-) 0 (-) >0.05
rs149276038 chr6:31190132 HCG27 [+18387bp] C - 12 A vs. G - - >1 (-) 14 (-) >0.05
rs12664433 chr6:31200672 HCG27 [+28927bp] C - 12 A vs. G 0.158 (A) 0.075 (A) <1 (-) 14 (-) >0.05
rs116016810 chr6:31219125 HLA-C [-17401bp] C - 5 T vs. C - 0.058 (C) >1 (-) 0 (-) >0.05
rs2894196 chr6:31230111 HLA-C [-6415bp] C - 3 A vs. T 0.05 (A) 0.15 (A) <1 (-) 0 (-) >0.05
rs77595907 chr6:31216055 HLA-C [-20471bp] C - 4 T vs. C 0.025 (C) 0.092 (C) >1 (-) 0 (-) >0.05
rs58783670 chr6:31219126 HLA-C [-17400bp] C - 5 A vs. G - 0.042 (A) <1 (-) 0 (-) >0.05
rs116563937 chr6:31203942 HCG27 [+32197bp] C - 5 A vs. G - - <1 (-) 0 (-) >0.05
rs9461690 chr6:31277035 HLA-C [+37128bp] C - 8 T vs. C 0.192 (T) 0.15 (T) >1 (-) 0 (-) >0.05
rs9368681 chr6:31279783 HLA-C [+39876bp] C - 3 T vs. C 0.067 (C) 0.425 (C) <1 (-) 0 (-) >0.05
rs113288104 chr6:31204402 HLA-C [-32124bp] C - 12 T vs. G - - <1 (-) 14 (-) >0.05
rs72863879 chr6:31203352 HCG27 [+31607bp] C - 12 A vs. G 0.15 (A) 0.075 (A) <1 (-) 14 (-) >0.05
rs55783607 chr6:31202764 HCG27 [+31019bp] C - 12 T vs. C - - >1 (-) 14 (-) >0.05
rs9264769 chr6:31261961 HLA-C [+22054bp] C - 12 A vs. C 0.125 (A) - <1 (-) 0 (-) >0.05
rs114344444 chr6:31203303 HCG27 [+31558bp] C - 5 A vs. G - - <1 (-) 0 (-) >0.05
rs115067599 chr6:31214471 HLA-C [-22055bp] C - 6 C vs. G 0.017 (C) 0.017 (C) <1 (-) 4 (-) >0.05
rs9368666 chr6:31229644 HLA-C [-6882bp] C - 3 A vs. G 0.033 (G) 0.15 (G) >1 (-) 0 (-) >0.05
rs9368665 chr6:31229248 HLA-C [-7278bp] C - 3 A vs. G 0.05 (G) 0.133 (G) >1 (-) 0 (-) >0.05
rs9366773 chr6:31229705 HLA-C [-6821bp] C - 3 C vs. G - 0.15 (G) >1 (-) 0 (-) >0.05
rs9394045 chr6:31229691 HLA-C [-6835bp] C - 3 T vs. G 0.033 (T) 0.15 (T) <1 (-) 0 (-) >0.05
rs7774303 chr6:31228215 HLA-C [-8311bp] C - 3 A vs. G 0.05 (A) 0.167 (A) <1 (-) 0 (-) >0.05
rs112758902 chr6:31201534 HCG27 [+29789bp] C - 12 T vs. C 0.158 (T) 0.05 (T) <1 (-) 14 (-) >0.05
rs9264757 chr6:31248170 HLA-C [+8263bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs9357118 chr6:31228812 HLA-C [-7714bp] C - 3 A vs. G 0.05 (G) 0.15 (G) >1 (-) 0 (-) >0.05
rs3130439 chr6:31221023 HLA-C [-15503bp] C - 4 A vs. G 0.417 (G) 0.392 (A) <1 (-) 0 (-) >0.05
rs9264087 chr6:31201736 HCG27 [+29991bp] C - 12 T vs. G 0.183 (G) 0.075 (G) <1 (-) 0 (-) >0.05
rs28732110 chr6:31263369 HLA-C [+23462bp] C - 12 A vs. G 0.142 (G) 0.167 (G) <1 (-) 0 (-) >0.05
rs28732111 chr6:31263372 HLA-C [+23465bp] C - 12 T vs. C 0.142 (T) 0.175 (T) >1 (-) 0 (-) >0.05
rs9405054 chr6:31280020 HLA-C [+40113bp] C - 4 A vs. G 0.067 (G) 0.425 (G) >1 (-) 0 (-) >0.05
rs3868082 chr6:31207692 HLA-C [-28834bp] C - 12 A vs. G 0.467 (A) 0.483 (G) >1 (-) 0 (-) >0.05
rs114006078 chr6:31211473 HLA-C [-25053bp] C - 4 A vs. G 0.05 (A) 0.067 (A) <1 (-) 0 (-) >0.05
rs12189871 chr6:31251924 HLA-C [+12017bp] C - 12 T vs. C 0.058 (T) 0.05 (T) <1 (-) 0 (-) >0.05
rs13210419 chr6:31266977 HLA-C [+27070bp] C - 12 A vs. G - - <1 (-) 2 (-) >0.05
rs72855954 chr6:31246969 HLA-C [+7062bp] C - 12 A vs. G 0.125 (G) 0.092 (G) <1 (-) 0 (-) >0.05
rs114872306 chr6:31206081 HLA-C [-30445bp] C - 12 A vs. T 0.058 (T) 0.075 (T) <1 (-) 0 (-) >0.05
rs149518445 chr6:31201438 HCG27 [+29693bp] C - 5 T vs. C - - >1 (-) 0 (-) >0.05
rs9257062 chr6:31269967 HLA-C [+30060bp] C - 12 A vs. G 0.083 (G) - >1 (-) 9 (-) >0.05
rs2248902 chr6:31234114 HLA-C [-2412bp] C - 6 A vs. G 0.233 (A) 0.05 (A) <1 (-) 39 (-) >0.05
rs2524042 chr6:31257160 HLA-C [+17253bp] C - 12 C vs. G 0.217 (G) 0.175 (G) <1 (-) 31 (-) >0.05
rs7766452 chr6:31249792 HLA-C [+9885bp] C - 12 A vs. G 0.017 (A) - >1 (-) 1 (-) >0.05
rs9348856 chr6:31229410 HLA-C [-7116bp] C - 3 T vs. C 0.042 (T) 0.15 (T) <1 (-) 0 (-) >0.05
rs1050428 chr6:31239543 HLA-C C - 8 T vs. C - - >1 (-) 0 (-) >0.05
rs3869125 chr6:31221447 HLA-C [-15079bp] C - 4 A vs. G 0.067 (G) 0.3 (G) >1 (-) 55 (-) >0.05
rs3132479 chr6:31274752 HLA-C [+34845bp] C - 11 A vs. G 0.417 (G) 0.45 (A) >1 (-) 0 (-) >0.05
rs28361029 chr6:31220203 HLA-C [-16323bp] C - 5 A vs. G 0.1 (A) - >1 (-) 48 (-) >0.05

Association studies for this region [+]