HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
Meta_image?name=rs2853923

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2524147 chr6:31262781 HLA-C [+22874bp] C - 12 A vs. G 0.217 (A) 0.208 (A) >1 (-) 26 (-) >0.05
rs77181030 chr6:31216139 HLA-C [-20387bp] C - 4 A vs. G 0.017 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs28744283 chr6:31217622 HLA-C [-18904bp] C - 5 A vs. G 0.117 (A) - >1 (-) 44 (-) >0.05
rs114198627 chr6:31195009 HCG27 [+23264bp] C - 3 A vs. G 0.017 (A) - >1 (-) 0 (-) >0.05
rs9405055 chr6:31280740 HLA-C [+40833bp] C - 3 A vs. G 0.067 (G) 0.425 (G) <1 (-) 0 (-) >0.05
rs112030670 chr6:31209380 HLA-C [-27146bp] C - 12 A vs. G - - >1 (-) 13 (-) >0.05
rs142273970 chr6:31222095 HLA-C [-14431bp] C - 4 T vs. C - - >1 (-) 26 (-) >0.05
rs28367590 chr6:31251057 HLA-C [+11150bp] C - 12 T vs. G 0.033 (T) - >1 (-) 0 (-) >0.05
rs9264802 chr6:31270414 HLA-C [+30507bp] C - 12 T vs. C 0.208 (T) 0.233 (T) <1 (-) 0 (-) >0.05
rs9468933 chr6:31265057 HLA-C [+25150bp] C - 12 A vs. T 0.083 (A) 0.075 (A) <1 (-) 4 (-) >0.05
rs2249741 chr6:31240712 HLA-C [+805bp] C - 11 A vs. C 0.483 (C) 0.467 (A) <1 (-) 0 (-) >0.05
rs2524131 chr6:31265087 HLA-C [+25180bp] C - 12 A vs. T 0.217 (T) 0.183 (T) >1 (-) 32 (-) >0.05
rs9468908 chr6:31216227 HLA-C [-20299bp] C - 8 A vs. G - - >1 (-) 53 (-) >0.05
rs3906272 chr6:31262924 HLA-C [+23017bp] C - 12 T vs. C 0.083 (T) 0.067 (T) >1 (-) 9 (-) >0.05
rs2524152 chr6:31261929 HLA-C [+22022bp] C - 12 T vs. C 0.217 (T) 0.217 (T) >1 (-) 33 (-) >0.05
rs9468929 chr6:31263216 HLA-C [+23309bp] C - 12 A vs. G 0.083 (A) 0.075 (A) <1 (-) 5 (-) >0.05
rs3130692 chr6:31285168 HLA-B [-36481bp] C - 3 T vs. C 0.15 (C) - >1 (-) 0 (-) >0.05
rs55893378 chr6:31211403 HLA-C [-25123bp] C - 9 A vs. G 0.025 (A) - <1 (-) 0 (-) >0.05
rs78564856 chr6:31214008 HLA-C [-22518bp] C - 5 A vs. G 0.025 (A) 0.092 (A) >1 (-) 0 (-) >0.05
rs73728463 chr6:31219885 HLA-C [-16641bp] C - 4 A vs. T 0.025 (T) - >1 (-) 0 (-) >0.05
rs148997121 chr6:31217245 HLA-C [-19281bp] C - 3 A vs. G - - <1 (-) 0 (-) >0.05
rs76911046 chr6:31218586 HLA-C [-17940bp] C - 4 T vs. C - 0.083 (C) <1 (-) 0 (-) >0.05
rs77321052 chr6:31218160 HLA-C [-18366bp] C - 4 C vs. G - 0.092 (C) >1 (-) 0 (-) >0.05
rs28367582 chr6:31241116 HLA-C [+1209bp] C - 11 T vs. C 0.042 (T) - <1 (-) 0 (-) >0.05
rs28367592 chr6:31253716 HLA-C [+13809bp] C - 12 C vs. G 0.042 (G) - <1 (-) 0 (-) >0.05
rs9468907 chr6:31215097 HLA-C [-21429bp] C - 8 T vs. G - - >1 (-) 52 (-) >0.05
rs113343816 chr6:31217424 HLA-C [-19102bp] C - 4 T vs. C 0.025 (T) 0.092 (T) >1 (-) 0 (-) >0.05
rs115620472 chr6:31217376 HLA-C [-19150bp] C - 4 T vs. C 0.025 (T) 0.075 (T) >1 (-) 0 (-) >0.05
rs9264801 chr6:31270405 HLA-C [+30498bp] C - 12 T vs. C 0.208 (T) 0.208 (T) <1 (-) 0 (-) >0.05
rs2524100 chr6:31235769 HLA-C [-757bp] C - 4 T vs. C 0.15 (C) 0.092 (C) <1 (-) 0 (-) >0.05
rs2524136 chr6:31264762 HLA-C [+24855bp] C - 12 A vs. G 0.217 (A) 0.225 (A) >1 (-) 31 (-) >0.05
rs112405988 chr6:31217335 HLA-C [-19191bp] C - 4 A vs. G 0.025 (G) 0.092 (G) <1 (-) 0 (-) >0.05
rs28367594 chr6:31258141 HLA-C [+18234bp] C - 12 A vs. G 0.042 (A) - >1 (-) 0 (-) >0.05
rs9380243 chr6:31279638 HLA-C [+39731bp] C - 4 A vs. C 0.067 (A) 0.4 (A) >1 (-) 0 (-) >0.05
rs28367584 chr6:31241578 HLA-C [+1671bp] C - 11 T vs. C 0.042 (T) - >1 (-) 0 (-) >0.05
rs138078412 chr6:31203639 HCG27 [+31894bp] C - 5 A vs. G - - >1 (-) 0 (-) >0.05
rs28605832 chr6:31279977 HLA-C [+40070bp] C - 3 A vs. G 0.067 (A) 0.425 (A) >1 (-) 0 (-) >0.05
chr6:31219263 chr6:31219263 HLA-C [-17263bp] C - 3 A vs. G - - >1 (-) 0 (-) >0.05
rs1345274 chr6:31190627 HCG27 [+18882bp] C - 12 C vs. G - - <1 (-) 0 (-) >0.05
rs28367596 chr6:31259446 HLA-C [+19539bp] C - 12 A vs. T 0.042 (T) - <1 (-) 0 (-) >0.05
rs80264822 chr6:31215334 HLA-C [-21192bp] C - 4 A vs. G 0.025 (A) - >1 (-) 0 (-) >0.05
rs1620471 chr6:31188607 HCG27 [+16862bp] C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs9263986 chr6:31191070 HCG27 [+19325bp] C - 12 A vs. G 0.45 (A) 0.458 (A) >1 (-) 0 (-) >0.05
rs113647885 chr6:31215293 HLA-C [-21233bp] C - 4 T vs. C 0.025 (T) 0.083 (T) >1 (-) 0 (-) >0.05
rs1623026 chr6:31188312 HCG27 [+16567bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs12197373 chr6:31278722 HLA-C [+38815bp] C - 5 A vs. G - - <1 (-) 0 (-) >0.05
rs117773049 chr6:31272804 HLA-C [+32897bp] C - 3 A vs. C - 0.008 (A) >1 (-) 0 (-) >0.05
rs142943269 chr6:31198499 HCG27 [+26754bp] C - 5 C vs. G - - <1 (-) 0 (-) >0.05
rs2853959 chr6:31233066 HLA-C [-3460bp] C - 4 T vs. C 0.15 (T) 0.067 (T) <1 (-) 0 (-) >0.05
rs2524109 chr6:31232447 HLA-C [-4079bp] C - 4 A vs. G 0.15 (A) 0.067 (A) <1 (-) 0 (-) >0.05

Association studies for this region [+]