HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3134771 chr6:31203744 HCG27 [+31999bp] C - 12 T vs. C - - >1 (-) 0 (-) <0.05
rs116069039 chr6:31198493 HCG27 [+26748bp] C - 12 A vs. G 0.033 (G) - <1 (-) 0 (-) <0.05
rs3130533 chr6:31208788 HLA-C [-27738bp] C - 12 A vs. T 0.392 (T) 0.408 (T) >1 (-) 35 (-) <0.05
rs11967011 chr6:31221540 HLA-C [-14986bp] C - 4 T vs. C 0.175 (C) 0.283 (C) >1 (-) 41 (-) <0.05
rs2394900 chr6:31213611 HLA-C [-22915bp] C - 11 C vs. G 0.408 (C) - >1 (-) 23 (-) <0.05
rs3130429 chr6:31219133 HLA-C [-17393bp] C - 10 A vs. G 0.4 (G) 0.392 (G) >1 (-) 24 (-) <0.05
rs73730350 chr6:31242667 HLA-C [+2760bp] C - 12 T vs. C 0.033 (T) - >1 (-) 0 (-) <0.05
rs73730015 chr6:31262053 HLA-C [+22146bp] C - 12 A vs. T 0.033 (T) - <1 (-) 6 (-) <0.05
rs3134767 chr6:31209860 HLA-C [-26666bp] C - 12 T vs. C 0.367 (C) 0.392 (C) >1 (-) 36 (-) <0.05
rs73730014 chr6:31261642 HLA-C [+21735bp] C - 12 A vs. C 0.033 (A) - >1 (-) 6 (-) <0.05
rs73728776 chr6:31253445 HLA-C [+13538bp] C - 12 A vs. G 0.008 (G) - <1 (-) 6 (-) <0.05
rs73730013 chr6:31261514 HLA-C [+21607bp] C - 12 T vs. C 0.033 (C) - <1 (-) 6 (-) <0.05
rs3132498 chr6:31208027 HLA-C [-28499bp] C - 12 T vs. C 0.4 (T) 0.408 (T) <1 (-) 34 (-) <0.05
rs2243866 chr6:31261196 HLA-C [+21289bp] All: C 103,235 14 G vs. A 0.417 (G) 0.275 (G) 1.05 (1.02-1.09) 14 (0-52) 0.001
rs73728775 chr6:31253315 HLA-C [+13408bp] C - 12 A vs. G - - <1 (-) 7 (-) <0.05
rs56714080 chr6:31242999 HLA-C [+3092bp] C - 12 A vs. C 0.033 (A) - >1 (-) 1 (-) <0.05
rs73728777 chr6:31253458 HLA-C [+13551bp] C - 12 T vs. C 0.033 (T) - >1 (-) 6 (-) <0.05
rs73730008 chr6:31260241 HLA-C [+20334bp] C - 12 T vs. G 0.033 (G) - <1 (-) 5 (-) <0.05
rs73728783 chr6:31253914 HLA-C [+14007bp] C - 12 T vs. C 0.025 (T) - >1 (-) 6 (-) <0.05
rs73728799 chr6:31259255 HLA-C [+19348bp] C - 12 T vs. C 0.033 (C) - <1 (-) 5 (-) <0.05
rs73728802 chr6:31259263 HLA-C [+19356bp] C - 12 T vs. C 0.033 (C) - <1 (-) 5 (-) <0.05
rs78602870 chr6:31258424 HLA-C [+18517bp] C - 12 T vs. C - - >1 (-) 5 (-) <0.05
rs28373246 chr6:31243522 HLA-C [+3615bp] C - 12 A vs. G 0.033 (G) - <1 (-) 2 (-) <0.05
rs114499435 chr6:31253618 HLA-C [+13711bp] C - 12 A vs. G 0.033 (A) - >1 (-) 7 (-) <0.05
rs73728778 chr6:31253564 HLA-C [+13657bp] C - 12 T vs. C 0.033 (T) - >1 (-) 7 (-) <0.05
rs3132496 chr6:31208610 HLA-C [-27916bp] C - 12 T vs. G 0.433 (G) 0.408 (G) <1 (-) 29 (-) <0.05
rs73728796 chr6:31257354 HLA-C [+17447bp] C - 12 A vs. G 0.033 (A) - >1 (-) 6 (-) <0.05
rs17198741 chr6:31256035 HLA-C [+16128bp] C - 12 A vs. G 0.033 (A) - >1 (-) 6 (-) <0.05
rs17198657 chr6:31248360 HLA-C [+8453bp] C - 12 T vs. C 0.025 (T) - >1 (-) 9 (-) <0.05
rs3134769 chr6:31205754 HLA-C [-30772bp] C - 12 T vs. C 0.392 (T) 0.258 (T) >1 (-) 0 (-) <0.05
rs11548029 chr6:31248259 HLA-C [+8352bp] C - 12 A vs. G - - <1 (-) 9 (-) <0.05
rs17198622 chr6:31247995 HLA-C [+8088bp] C - 12 T vs. C - - >1 (-) 9 (-) <0.05
rs56229786 chr6:31247890 HLA-C [+7983bp] C - 12 A vs. T - - >1 (-) 9 (-) <0.05
rs17192435 chr6:31256722 HLA-C [+16815bp] C - 12 A vs. C 0.033 (A) - >1 (-) 6 (-) <0.05
rs17192400 chr6:31256320 HLA-C [+16413bp] C - 12 A vs. T 0.033 (T) - <1 (-) 6 (-) <0.05
rs17198748 chr6:31256521 HLA-C [+16614bp] C - 12 A vs. G 0.033 (A) - >1 (-) 6 (-) <0.05
rs73728774 chr6:31252075 HLA-C [+12168bp] C - 12 A vs. C 0.025 (A) - >1 (-) 8 (-) <0.05
rs73728794 chr6:31257194 HLA-C [+17287bp] C - 12 A vs. G 0.033 (G) - <1 (-) 6 (-) <0.05
rs114652772 chr6:31252026 HLA-C [+12119bp] C - 12 A vs. C - - <1 (-) 8 (-) <0.05
rs113629572 chr6:31252019 HLA-C [+12112bp] C - 12 C vs. G 0.033 (C) - >1 (-) 8 (-) <0.05
rs6918237 chr6:31244154 HLA-C [+4247bp] C - 12 A vs. C 0.025 (C) - <1 (-) 3 (-) <0.05
rs73728791 chr6:31255052 HLA-C [+15145bp] C - 12 T vs. C 0.033 (C) - <1 (-) 6 (-) <0.05
rs73730363 chr6:31246868 HLA-C [+6961bp] C - 12 T vs. C - - <1 (-) 9 (-) <0.05
rs143944172 chr6:31251634 HLA-C [+11727bp] C - 12 A vs. G - - <1 (-) 8 (-) <0.05
rs56742828 chr6:31250649 HLA-C [+10742bp] C - 12 T vs. C 0.025 (C) - <1 (-) 8 (-) <0.05
rs6911623 chr6:31246323 HLA-C [+6416bp] C - 12 A vs. G - - <1 (-) 6 (-) <0.05
rs55685705 chr6:31249157 HLA-C [+9250bp] C - 12 A vs. G - - >1 (-) 10 (-) <0.05
rs58941025 chr6:31249442 HLA-C [+9535bp] C - 12 A vs. G - - <1 (-) 10 (-) <0.05
rs17198713 chr6:31248739 HLA-C [+8832bp] C - 12 A vs. G 0.033 (A) - >1 (-) 10 (-) <0.05
rs9264228 chr6:31222168 HLA-C [-14358bp] C - 4 A vs. G - - >1 (-) 0 (-) <0.05

Association studies for this region [+]