HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs17197839 chr6:31221299 HLA-C [-15227bp] C - 4 A vs. G 0.117 (A) 0.142 (A) <1 (-) 47 (-) <0.05
rs6919409 chr6:31244532 HLA-C [+4625bp] C - 12 A vs. G 0.025 (A) - >1 (-) 4 (-) <0.05
rs6907206 chr6:31245911 HLA-C [+6004bp] C - 12 A vs. G - - >1 (-) 6 (-) <0.05
rs9264393 chr6:31229279 HLA-C [-7247bp] All: C 80,278 5 G vs. A 0.475 (G) 0.392 (G) 1.09 (1.03-1.15) 24 (0-69) 0.001
rs2308527 chr6:31239821 HLA-C C - 9 T vs. G 0.483 (G) 0.333 (G) <1 (-) 0 (-) <0.05
rs28397296 chr6:31206747 HLA-C [-29779bp] All: C 103,235 14 T vs. C 0.175 (T) 0.233 (T) 0.93 (0.89-0.97) 26 (0-61) 0.001
rs2394902 chr6:31214557 HLA-C [-21969bp] C - 10 T vs. C 0.4 (T) 0.425 (T) <1 (-) 15 (-) <0.05
rs3134772 chr6:31203217 HCG27 [+31472bp] C - 12 C vs. G 0.408 (G) 0.25 (G) <1 (-) 0 (-) <0.05
rs3132516 chr6:31203074 HCG27 [+31329bp] C - 12 T vs. G - - >1 (-) 0 (-) <0.05
rs17192281 chr6:31248075 HLA-C [+8168bp] C - 12 A vs. G 0.1 (A) 0.058 (A) >1 (-) 46 (-) <0.05
rs9264227 chr6:31222119 HLA-C [-14407bp] C - 4 A vs. G - - <1 (-) 0 (-) <0.05
rs3130521 chr6:31196376 HCG27 [+24631bp] C - 12 T vs. C 0.392 (T) 0.308 (T) >1 (-) 0 (-) <0.05
rs9264181 chr6:31219922 HLA-C [-16604bp] C - 10 T vs. C - - <1 (-) 14 (-) <0.05
rs16899160 chr6:31256667 HLA-C [+16760bp] C - 12 A vs. G 0.033 (A) - >1 (-) 9 (-) <0.05
rs17198664 chr6:31248382 HLA-C [+8475bp] C - 12 T vs. C 0.083 (T) 0.058 (T) >1 (-) 48 (-) <0.05
rs9264098 chr6:31204315 HLA-C [-32211bp] C - 12 T vs. C 0.4 (T) - >1 (-) 0 (-) <0.05
rs2394892 chr6:31205382 HLA-C [-31144bp] All: C 103,235 14 A vs. G 0.175 (A) 0.233 (A) 0.93 (0.90-0.98) 25 (0-60) 0.002
rs7768431 chr6:31202665 HCG27 [+30920bp] All: C 103,235 14 A vs. G 0.167 (A) 0.233 (A) 0.93 (0.90-0.98) 25 (0-60) 0.002
rs73728773 chr6:31251782 HLA-C [+11875bp] C - 12 T vs. C 0.033 (T) - >1 (-) 10 (-) <0.05
rs3130417 chr6:31216940 HLA-C [-19586bp] C - 10 A vs. C 0.4 (A) 0.408 (A) <1 (-) 20 (-) <0.05
rs9264532 chr6:31234381 HLA-C [-2145bp] C - 10 T vs. C 0.333 (C) 0.367 (C) <1 (-) 42 (-) <0.05
rs73728788 chr6:31254686 HLA-C [+14779bp] C - 12 T vs. C - - <1 (-) 14 (-) <0.05
rs73728786 chr6:31254683 HLA-C [+14776bp] C - 12 A vs. C - - <1 (-) 14 (-) <0.05
rs17884362 chr6:31237917 HLA-C C - 4 T vs. C 0.117 (T) 0.225 (T) <1 (-) 49 (-) <0.05
rs7452529 chr6:31220253 HLA-C [-16273bp] C - 9 A vs. T 0.233 (T) 0.483 (T) <1 (-) 0 (-) <0.05
rs3095245 chr6:31213902 HLA-C [-22624bp] C - 11 T vs. C 0.4 (C) 0.408 (C) >1 (-) 19 (-) <0.05
rs9264191 chr6:31220232 HLA-C [-16294bp] C - 9 C vs. G 0.225 (G) 0.475 (G) <1 (-) 0 (-) <0.05
chr6:31210079 chr6:31210079 HLA-C [-26447bp] C - 6 A vs. G - - <1 (-) 8 (-) <0.05
rs3130409 chr6:31213811 HLA-C [-22715bp] C - 11 A vs. G 0.4 (A) 0.408 (A) <1 (-) 19 (-) <0.05
rs9264246 chr6:31222712 HLA-C [-13814bp] C - 3 A vs. G - - <1 (-) 3 (-) <0.05
rs9264190 chr6:31220202 HLA-C [-16324bp] C - 9 T vs. C 0.233 (T) 0.45 (T) >1 (-) 0 (-) <0.05
rs28397304 chr6:31219913 HLA-C [-16613bp] C - 5 A vs. G 0.167 (A) 0.258 (A) <1 (-) 50 (-) <0.05
rs7449932 chr6:31220244 HLA-C [-16282bp] C - 9 T vs. C 0.225 (C) 0.467 (C) <1 (-) 0 (-) <0.05
rs2394949 chr6:31230136 HLA-C [-6390bp] C - 3 T vs. C 0.258 (T) 0.225 (T) >1 (-) 67 (-) <0.05
rs9264230 chr6:31222196 HLA-C [-14330bp] C - 4 A vs. G - - >1 (-) 0 (-) <0.05
rs3134747 chr6:31220567 HLA-C [-15959bp] C - 9 T vs. C 0.217 (C) 0.225 (C) <1 (-) 0 (-) <0.05
rs73728781 chr6:31253619 HLA-C [+13712bp] C - 12 T vs. C 0.083 (T) 0.117 (T) >1 (-) 38 (-) <0.05
rs9264232 chr6:31222243 HLA-C [-14283bp] C - 4 A vs. G - - <1 (-) 0 (-) <0.05
rs35556213 chr6:31234131 HLA-C [-2395bp] C - 4 A vs. T 0.133 (A) 0.258 (A) <1 (-) 57 (-) <0.05
rs72558163 chr6:31237342 HLA-C C - 4 T vs. G 0.1 (T) 0.233 (T) <1 (-) 52 (-) <0.05
rs73730325 chr6:31234150 HLA-C [-2376bp] C - 7 A vs. G 0.033 (A) - >1 (-) 30 (-) <0.05
rs9264244 chr6:31222610 HLA-C [-13916bp] C - 4 A vs. G - - <1 (-) 0 (-) <0.05
rs11966716 chr6:31235265 HLA-C [-1261bp] C - 4 T vs. C 0.133 (T) 0.258 (T) <1 (-) 53 (-) <0.05
rs9264243 chr6:31222607 HLA-C [-13919bp] C - 4 A vs. G - - >1 (-) 0 (-) <0.05
rs36118255 chr6:31235384 HLA-C [-1142bp] C - 4 C vs. G 0.133 (C) 0.283 (C) <1 (-) 52 (-) <0.05
rs35303934 chr6:31234222 HLA-C [-2304bp] C - 4 A vs. G 0.117 (A) 0.242 (A) <1 (-) 57 (-) <0.05
rs3134754 chr6:31216329 HLA-C [-20197bp] C - 10 A vs. G 0.4 (G) - >1 (-) 18 (-) <0.05
rs72657649 chr6:31232496 HLA-C [-4030bp] C - 4 T vs. G 0.125 (T) 0.275 (T) <1 (-) 64 (-) <0.05
rs3130438 chr6:31221022 HLA-C [-15504bp] C - 8 T vs. C 0.217 (T) 0.242 (T) >1 (-) 0 (-) <0.05
rs73728779 chr6:31253605 HLA-C [+13698bp] C - 12 T vs. C 0.1 (C) 0.117 (C) <1 (-) 38 (-) <0.05

Association studies for this region [+]