HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs5013807 chr6:31278785 HLA-C [+38878bp] C - 5 T vs. C - - >1 (-) 37 (-) <0.05
rs34131062 chr6:31236410 HLA-C [-116bp] C - 4 T vs. C 0.125 (T) 0.25 (T) <1 (-) 51 (-) <0.05
rs34057829 chr6:31236514 HLA-C [-12bp] C - 4 A vs. C 0.133 (A) 0.217 (A) <1 (-) 51 (-) <0.05
rs1130552 chr6:31236643 HLA-C C - 4 T vs. C 0.142 (C) 0.242 (C) >1 (-) 52 (-) <0.05
rs28397310 chr6:31234501 HLA-C [-2025bp] C - 4 A vs. C 0.175 (A) 0.233 (A) <1 (-) 57 (-) <0.05
rs34634498 chr6:31236400 HLA-C [-126bp] C - 4 A vs. G 0.125 (A) 0.25 (A) <1 (-) 51 (-) <0.05
rs3134755 chr6:31216300 HLA-C [-20226bp] C - 10 T vs. C 0.392 (T) 0.392 (T) <1 (-) 15 (-) <0.05
rs35075694 chr6:31236534 HLA-C C - 4 A vs. G 0.125 (A) 0.233 (A) <1 (-) 52 (-) <0.05
rs17885436 chr6:31237002 HLA-C C - 4 C vs. G 0.142 (C) 0.225 (C) <1 (-) 52 (-) <0.05
rs35482069 chr6:31236231 HLA-C [-295bp] C - 4 T vs. G 0.133 (T) 0.25 (T) <1 (-) 52 (-) <0.05
rs5028537 chr6:31278714 HLA-C [+38807bp] C - 7 A vs. G 0.325 (G) - <1 (-) 0 (-) <0.05
rs3095254 chr6:31221668 HLA-C [-14858bp] C - 4 C vs. G 0.35 (C) 0.492 (C) >1 (-) 0 (-) <0.05
rs9264971 chr6:31278472 HLA-C [+38565bp] C - 7 T vs. C 0.325 (C) 0.325 (C) <1 (-) 0 (-) <0.05
rs3130433 chr6:31219638 HLA-C [-16888bp] C - 9 A vs. G 0.225 (A) 0.3 (A) >1 (-) 0 (-) <0.05
rs7755852 chr6:31277988 HLA-C [+38081bp] C - 7 A vs. G 0.475 (A) 0.392 (A) >1 (-) 0 (-) <0.05
rs2844619 chr6:31242223 HLA-C [+2316bp] C - 12 C vs. G 0.417 (C) - >1 (-) 0 (-) <0.05
rs3130695 chr6:31211050 HLA-C [-25476bp] C - 12 A vs. G 0.217 (A) 0.217 (A) >1 (-) 0 (-) <0.05
rs57742010 chr6:31247525 HLA-C [+7618bp] C - 12 A vs. T - - <1 (-) 8 (-) <0.05
rs34314881 chr6:31233937 HLA-C [-2589bp] C - 4 A vs. G 0.142 (A) 0.267 (A) <1 (-) 59 (-) <0.05
rs9263988 chr6:31191287 HCG27 [+19542bp] C - 12 T vs. C - 0.05 (T) >1 (-) 0 (-) <0.05
rs9263992 chr6:31192587 HCG27 [+20842bp] C - 12 A vs. C 0.05 (C) 0.058 (C) <1 (-) 0 (-) <0.05
rs9264456 chr6:31231442 HLA-C [-5084bp] C - 9 A vs. G - - >1 (-) 21 (-) <0.05
rs9264247 chr6:31222842 HLA-C [-13684bp] C - 3 A vs. G - - <1 (-) 3 (-) <0.05
rs6907622 chr6:31235610 HLA-C [-916bp] C - 9 A vs. C 0.233 (C) 0.208 (C) <1 (-) 30 (-) <0.05
rs4582416 chr6:31216162 HLA-C [-20364bp] C - 8 T vs. C - 0.017 (T) >1 (-) 10 (-) <0.05
rs9264581 chr6:31235786 HLA-C [-740bp] C - 9 T vs. C 0.233 (C) 0.225 (C) <1 (-) 31 (-) <0.05
rs6906846 chr6:31245736 HLA-C [+5829bp] C - 12 A vs. G 0.325 (A) 0.308 (A) >1 (-) 22 (-) <0.05
rs9264578 chr6:31235708 HLA-C [-818bp] C - 9 C vs. G 0.233 (C) 0.225 (C) >1 (-) 31 (-) <0.05
rs2894198 chr6:31230990 HLA-C [-5536bp] C - 6 A vs. G - - <1 (-) 24 (-) <0.05
rs9264555 chr6:31234911 HLA-C [-1615bp] C - 10 A vs. G 0.233 (A) 0.225 (A) >1 (-) 9 (-) <0.05
rs9264248 chr6:31222898 HLA-C [-13628bp] C - 3 T vs. C - - >1 (-) 0 (-) <0.05
rs9264670 chr6:31239722 HLA-C C - 9 A vs. C 0.3 (A) 0.217 (A) >1 (-) 46 (-) <0.05
rs9264249 chr6:31222901 HLA-C [-13625bp] C - 3 C vs. G - - >1 (-) 0 (-) <0.05
rs9264042 chr6:31196801 HCG27 [+25056bp] C - 12 A vs. G 0.058 (A) 0.05 (A) >1 (-) 15 (-) <0.05
rs9264443 chr6:31231105 HLA-C [-5421bp] C - 3 T vs. C 0.275 (T) - >1 (-) 18 (-) <0.05
rs3095257 chr6:31220318 HLA-C [-16208bp] C - 9 T vs. G 0.383 (G) 0.458 (T) <1 (-) 16 (-) <0.05
rs9264524 chr6:31233845 HLA-C [-2681bp] C - 12 T vs. G 0.233 (T) 0.217 (T) >1 (-) 24 (-) <0.05
rs3130520 chr6:31195120 HCG27 [+23375bp] C - 12 T vs. C 0.192 (T) 0.25 (T) >1 (-) 31 (-) <0.05
rs9264522 chr6:31233643 HLA-C [-2883bp] C - 12 T vs. C 0.233 (T) 0.208 (T) >1 (-) 24 (-) <0.05
rs2394955 chr6:31233396 HLA-C [-3130bp] C - 12 A vs. G 0.233 (G) 0.225 (G) <1 (-) 26 (-) <0.05
rs2394954 chr6:31233395 HLA-C [-3131bp] C - 12 T vs. C 0.267 (T) 0.233 (T) >1 (-) 26 (-) <0.05
rs115456947 chr6:31276647 HLA-C [+36740bp] C - 11 T vs. C 0.05 (T) - >1 (-) 12 (-) <0.05
rs9264493 chr6:31232697 HLA-C [-3829bp] C - 12 A vs. G 0.242 (A) 0.208 (A) >1 (-) 29 (-) <0.05
rs2394953 chr6:31233353 HLA-C [-3173bp] C - 12 A vs. G 0.242 (G) 0.208 (G) <1 (-) 26 (-) <0.05
rs9264529 chr6:31234074 HLA-C [-2452bp] C - 12 A vs. G 0.267 (G) 0.225 (G) <1 (-) 19 (-) <0.05
rs9264481 chr6:31232318 HLA-C [-4208bp] C - 12 T vs. C 0.233 (T) 0.217 (T) >1 (-) 26 (-) <0.05
rs9264496 chr6:31232723 HLA-C [-3803bp] C - 12 A vs. G 0.258 (A) 0.208 (A) >1 (-) 29 (-) <0.05
rs3130543 chr6:31232147 HLA-C [-4379bp] C - 12 T vs. C 0.233 (C) 0.217 (C) <1 (-) 26 (-) <0.05
rs2394942 chr6:31220364 HLA-C [-16162bp] C - 9 T vs. C 0.225 (T) 0.467 (T) >1 (-) 0 (-) <0.05
rs9264483 chr6:31232446 HLA-C [-4080bp] C - 12 T vs. C 0.233 (T) 0.208 (T) >1 (-) 26 (-) <0.05

Association studies for this region [+]