HLA-C, chr6:31236526-31239907 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2853923 chr6:31265737 HLA-C [+25830bp] All: C 103,235 14 A vs. G 0.492 (A) 0.442 (A) 1.07 (1.04-1.11) 0 (0-47) 9.90e-06
Meta_image?name=rs2853923

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9264527 chr6:31233992 HLA-C [-2534bp] C - 12 T vs. C 0.233 (C) 0.2 (C) <1 (-) 21 (-) <0.05
rs9264218 chr6:31221895 HLA-C [-14631bp] C - 4 A vs. T 0.358 (A) 0.392 (A) >1 (-) 0 (-) <0.05
rs3134782 chr6:31197633 HCG27 [+25888bp] C - 12 A vs. G 0.192 (G) 0.25 (G) <1 (-) 28 (-) <0.05
rs28498059 chr6:31240353 HLA-C [+446bp] C - 10 A vs. C 0.183 (A) 0.208 (A) >1 (-) 37 (-) <0.05
rs9264528 chr6:31234058 HLA-C [-2468bp] C - 12 A vs. G 0.25 (A) 0.233 (A) >1 (-) 20 (-) <0.05
rs9264495 chr6:31232722 HLA-C [-3804bp] C - 12 T vs. C 0.242 (C) 0.208 (C) <1 (-) 28 (-) <0.05
rs3095252 chr6:31194747 HCG27 [+23002bp] C - 12 A vs. G 0.192 (G) 0.175 (G) <1 (-) 28 (-) <0.05
rs9264500 chr6:31232825 HLA-C [-3701bp] C - 12 A vs. G 0.25 (G) 0.208 (G) <1 (-) 28 (-) <0.05
rs9264231 chr6:31222204 HLA-C [-14322bp] C - 4 A vs. G - - >1 (-) 0 (-) <0.05
rs2894203 chr6:31233532 HLA-C [-2994bp] C - 12 A vs. G 0.233 (G) 0.325 (G) <1 (-) 23 (-) <0.05
rs6900444 chr6:31241182 HLA-C [+1275bp] C - 12 T vs. C - - <1 (-) 0 (-) <0.05
rs3869112 chr6:31197815 HCG27 [+26070bp] C - 12 C vs. G - - <1 (-) 13 (-) <0.05
rs3868078 chr6:31199164 HCG27 [+27419bp] C - 12 T vs. C 0.058 (T) 0.058 (T) >1 (-) 12 (-) <0.05
rs3130941 chr6:31197514 HCG27 [+25769bp] C - 12 C vs. G 0.192 (C) 0.242 (C) >1 (-) 27 (-) <0.05
rs80053068 chr6:31270026 HLA-C [+30119bp] C - 12 T vs. C 0.05 (C) - <1 (-) 3 (-) <0.05
rs7774136 chr6:31196478 HCG27 [+24733bp] C - 12 C vs. G 0.058 (C) 0.05 (C) >1 (-) 13 (-) <0.05
rs9264981 chr6:31280079 HLA-C [+40172bp] C - 5 T vs. C 0.425 (C) 0.267 (T) <1 (-) 0 (-) <0.05
rs9264020 chr6:31195476 HCG27 [+23731bp] C - 12 C vs. G 0.058 (G) 0.05 (G) <1 (-) 13 (-) <0.05
rs9264021 chr6:31195485 HCG27 [+23740bp] C - 12 T vs. C 0.058 (T) 0.05 (T) >1 (-) 13 (-) <0.05
rs3130408 chr6:31213791 HLA-C [-22735bp] C - 11 A vs. G 0.225 (G) 0.217 (G) <1 (-) 0 (-) <0.05
rs3095249 chr6:31209245 HLA-C [-27281bp] C - 12 T vs. C - - <1 (-) 0 (-) <0.05
rs9264966 chr6:31277518 HLA-C [+37611bp] C - 7 T vs. C 0.217 (T) 0.2 (T) >1 (-) 8 (-) <0.05
rs9264965 chr6:31277493 HLA-C [+37586bp] C - 7 T vs. C 0.217 (C) 0.2 (C) <1 (-) 8 (-) <0.05
rs114506115 chr6:31220426 HLA-C [-16100bp] C - 7 A vs. G 0.033 (A) - >1 (-) 26 (-) <0.05
rs9264526 chr6:31233988 HLA-C [-2538bp] C - 12 T vs. G 0.233 (G) 0.192 (G) <1 (-) 16 (-) <0.05
rs3869114 chr6:31199466 HCG27 [+27721bp] C - 12 A vs. G 0.058 (A) 0.042 (A) >1 (-) 24 (-) <0.05
rs3869113 chr6:31199296 HCG27 [+27551bp] C - 12 A vs. G 0.05 (A) 0.05 (A) >1 (-) 10 (-) <0.05
rs5028535 chr6:31278562 HLA-C [+38655bp] C - 7 T vs. G 0.217 (T) - >1 (-) 10 (-) <0.05
rs9264763 chr6:31249196 HLA-C [+9289bp] C - 12 A vs. C - - >1 (-) 34 (-) <0.05
rs3132500 chr6:31188611 HCG27 [+16866bp] C - 12 T vs. G - - >1 (-) 15 (-) <0.05
rs9264397 chr6:31229366 HLA-C [-7160bp] C - 3 C vs. G 0.258 (G) 0.275 (G) <1 (-) 59 (-) <0.05
rs9264398 chr6:31229377 HLA-C [-7149bp] C - 3 T vs. C 0.258 (C) 0.258 (C) <1 (-) 59 (-) <0.05
rs9264970 chr6:31278449 HLA-C [+38542bp] C - 7 A vs. T 0.217 (A) 0.183 (A) >1 (-) 11 (-) <0.05
rs73730049 chr6:31273743 HLA-C [+33836bp] C - 11 T vs. C 0.042 (T) - >1 (-) 5 (-) <0.05
rs6906908 chr6:31235254 HLA-C [-1272bp] C - 9 A vs. G - 0.217 (G) <1 (-) 22 (-) <0.05
rs9264402 chr6:31229444 HLA-C [-7082bp] C - 4 T vs. C 0.242 (C) 0.233 (C) <1 (-) 40 (-) <0.05
rs113997854 chr6:31272827 HLA-C [+32920bp] C - 12 T vs. C 0.05 (T) - >1 (-) 0 (-) <0.05
rs3132497 chr6:31208591 HLA-C [-27935bp] C - 12 T vs. G 0.217 (G) 0.217 (G) <1 (-) 0 (-) <0.05
rs2394947 chr6:31221396 HLA-C [-15130bp] C - 6 A vs. G - 0.35 (A) >1 (-) 0 (-) <0.05
rs17198804 chr6:31265508 HLA-C [+25601bp] C - 12 T vs. C 0.05 (T) - >1 (-) 0 (-) <0.05
rs17192456 chr6:31265564 HLA-C [+25657bp] C - 12 A vs. G 0.05 (G) - <1 (-) 0 (-) <0.05
rs58742490 chr6:31265376 HLA-C [+25469bp] C - 12 A vs. G 0.05 (A) - >1 (-) 0 (-) <0.05
rs9264452 chr6:31231232 HLA-C [-5294bp] C - 10 A vs. G 0.267 (G) - <1 (-) 35 (-) <0.05
rs9264453 chr6:31231234 HLA-C [-5292bp] C - 10 A vs. G - - <1 (-) 35 (-) <0.05
rs6918887 chr6:31272133 HLA-C [+32226bp] C - 12 A vs. G 0.05 (G) - <1 (-) 0 (-) <0.05
rs17198881 chr6:31265998 HLA-C [+26091bp] C - 12 T vs. C 0.05 (T) - >1 (-) 0 (-) <0.05
rs17198867 chr6:31265971 HLA-C [+26064bp] C - 12 T vs. G 0.05 (T) - >1 (-) 0 (-) <0.05
rs9264395 chr6:31229289 HLA-C [-7237bp] C - 3 A vs. G 0.233 (A) 0.258 (A) >1 (-) 59 (-) <0.05
rs9264441 chr6:31231068 HLA-C [-5458bp] C - 11 T vs. C - - >1 (-) 28 (-) <0.05
rs3130951 chr6:31186868 HCG27 [+15123bp] C - 12 T vs. C - - >1 (-) 28 (-) <0.05

Association studies for this region [+]