HLA-DOB, chr6:32780540-32784825 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
Meta_image?name=rs9276627

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
rs115360810 chr6:32796310 TAP2 All: C 103,235 14 G vs. A 0.05 (G) - 0.79 (0.71-0.87) 0 (0-53) 9.30e-06
rs4148876 chr6:32796793 TAP2 All: C 103,235 14 A vs. G 0.067 (A) 0.117 (A) 0.87 (0.81-0.92) 18 (0-55) 1.02e-05
rs116309362 chr6:32754876 HLA-DQB2 [+23565bp] All: C 103,235 14 C vs. T 0.042 (C) - 0.78 (0.70-0.88) 0 (0-54) 2.41e-05
rs28724890 chr6:32741844 HLA-DQB2 [+10533bp] All: C 55,164 7 A vs. G 0.025 (A) - 1.32 (1.14-1.53) 67 (26-85) 2.27e-04
rs28724897 chr6:32799157 TAP2 All: C 103,235 14 G vs. A 0.042 (G) - 1.16 (1.06-1.26) 58 (25-77) 9.02e-04
rs9357155 chr6:32809848 PSMB8 C - 12 A vs. G 0.158 (A) 0.125 (A) <1 (-) 0 (-) <0.05
rs28724899 chr6:32829141 PSMB9 [+1779bp] C - 12 A vs. T 0.158 (T) 0.142 (T) >1 (-) 0 (-) <0.05
rs2071543 chr6:32811629 PSMB8 C - 12 T vs. G 0.158 (T) 0.125 (T) <1 (-) 0 (-) <0.05
rs2284190 chr6:32819517 PSMB9 C - 12 T vs. C 0.158 (C) 0.133 (C) >1 (-) 0 (-) <0.05
rs2071536 chr6:32821447 PSMB9 C - 12 T vs. C 0.158 (T) - <1 (-) 0 (-) <0.05
rs4959116 chr6:32831661 PSMB9 [+4299bp] C - 12 T vs. C 0.125 (T) 0.108 (T) <1 (-) 4 (-) <0.05
rs9276610 chr6:32742095 HLA-DQB2 [+10784bp] C - 12 A vs. T 0.15 (A) - >1 (-) 41 (-) <0.05
rs2071479 chr6:32781112 HLA-DOB C - 10 T vs. C 0.058 (T) 0.058 (T) <1 (-) 0 (-) <0.05
rs28724895 chr6:32766482 HLA-DOB [-14058bp] All: C 103,235 14 C vs. T 0.033 (C) - 1.17 (1.04-1.32) 46 (0-71) 0.007
rs3763355 chr6:32786882 HLA-DOB [+2057bp] C - 12 T vs. C 0.067 (C) 0.133 (C) >1 (-) 0 (-) <0.05
rs58327373 chr6:32757589 HLA-DOB [-22951bp] C - 12 A vs. T 0.042 (T) 0.058 (T) >1 (-) 0 (-) <0.05
rs57912571 chr6:32750921 HLA-DQB2 [+19610bp] C - 11 A vs. G 0.05 (G) 0.05 (G) >1 (-) 0 (-) <0.05
rs17213749 chr6:32787651 TAP2 [-1959bp] C - 10 A vs. G 0.05 (A) 0.058 (A) <1 (-) 0 (-) <0.05
rs1812006 chr6:32778656 HLA-DOB [-1884bp] C - 12 A vs. G 0.183 (A) - >1 (-) 22 (-) <0.05
rs2067578 chr6:32762461 HLA-DOB [-18079bp] C - 12 A vs. G 0.042 (A) - <1 (-) 0 (-) <0.05
rs115196245 chr6:32778077 HLA-DOB [-2463bp] C - 12 C vs. G 0.05 (C) - <1 (-) 0 (-) <0.05
rs55888430 chr6:32785142 HLA-DOB [+317bp] C - 12 A vs. G 0.058 (A) 0.058 (A) <1 (-) 0 (-) <0.05
rs73408475 chr6:32766496 HLA-DOB [-14044bp] C - 12 T vs. G 0.05 (G) 0.05 (G) >1 (-) 0 (-) <0.05
rs9391747 chr6:32806949 TAP2 [+392bp] C - 12 T vs. C - - <1 (-) 0 (-) <0.05
rs73410764 chr6:32785841 HLA-DOB [+1016bp] C - 12 T vs. C 0.058 (T) 0.133 (T) <1 (-) 0 (-) <0.05
rs7767167 chr6:32765182 HLA-DOB [-15358bp] C - 12 A vs. G 0.167 (G) 0.0 (G) <1 (-) 24 (-) <0.05
rs2071554 chr6:32784676 HLA-DOB C - 12 T vs. C 0.05 (T) 0.117 (T) <1 (-) 0 (-) <0.05
rs77152259 chr6:32793534 TAP2 C - 12 T vs. C 0.05 (C) 0.058 (C) >1 (-) 0 (-) <0.05
rs73410789 chr6:32793721 TAP2 C - 12 C vs. G 0.05 (C) 0.058 (C) <1 (-) 0 (-) <0.05
rs1383258 chr6:32783405 HLA-DOB C - 12 T vs. C 0.058 (T) 0.117 (T) <1 (-) 0 (-) <0.05
rs17220157 chr6:32787592 TAP2 [-2018bp] C - 12 A vs. G 0.058 (A) 0.067 (A) <1 (-) 0 (-) <0.05
rs9276702 chr6:32756741 HLA-DOB [-23799bp] C - 12 A vs. G 0.225 (A) - >1 (-) 20 (-) <0.05
rs6457681 chr6:32773497 HLA-DOB [-7043bp] C - 12 T vs. G - - <1 (-) 0 (-) <0.05
rs9276710 chr6:32757102 HLA-DOB [-23438bp] C - 12 T vs. C 0.175 (C) 0.075 (C) >1 (-) 24 (-) <0.05
rs6924102 chr6:32811383 PSMB8 C - 12 A vs. G 0.417 (G) 0.275 (G) >1 (-) 22 (-) <0.05
rs3763364 chr6:32807520 TAP2 [+963bp] C - 12 A vs. T 0.433 (T) 0.283 (T) >1 (-) 23 (-) <0.05
rs735883 chr6:32816054 PSMB9 C - 12 A vs. G 0.408 (A) 0.258 (A) <1 (-) 0 (-) <0.05
rs73410785 chr6:32792533 TAP2 C - 12 A vs. C 0.058 (C) 0.058 (C) >1 (-) 0 (-) <0.05
rs9276810 chr6:32810443 PSMB8 C - 12 A vs. G 0.45 (A) 0.275 (A) <1 (-) 26 (-) <0.05
rs4148870 chr6:32806391 TAP2 C - 12 T vs. C 0.433 (T) 0.367 (T) <1 (-) 10 (-) <0.05
rs4513843 chr6:32776590 HLA-DOB [-3950bp] C - 12 C vs. G 0.175 (C) 0.117 (C) <1 (-) 25 (-) <0.05
rs4713598 chr6:32806786 TAP2 [+229bp] C - 12 T vs. G 0.433 (G) 0.275 (G) >1 (-) 15 (-) <0.05
rs3819720 chr6:32804570 TAP2 C - 12 A vs. G 0.35 (A) 0.225 (A) <1 (-) 24 (-) <0.05
rs62397688 chr6:32802462 TAP2 C - 12 A vs. G 0.067 (A) 0.05 (A) <1 (-) 0 (-) <0.05
rs2071464 chr6:32809076 PSMB8 C - 12 A vs. G - 0.275 (A) <1 (-) 26 (-) <0.05
rs4148869 chr6:32806576 TAP2 [+19bp] C - 12 T vs. C 0.433 (T) 0.292 (T) <1 (-) 6 (-) <0.05
rs4947350 chr6:32767620 HLA-DOB [-12920bp] C - 12 T vs. C 0.175 (C) 0.117 (C) >1 (-) 28 (-) <0.05
rs1053752 chr6:32814127 PSMB9 C - 12 A vs. G 0.425 (A) 0.275 (A) <1 (-) 29 (-) <0.05
rs112647257 chr6:32804381 TAP2 C - 12 A vs. T 0.058 (T) 0.1 (T) <1 (-) 0 (-) <0.05

Association studies for this region [+]