HLA-DOB, chr6:32780540-32784825 +/- 50000 base pairs
View on:

Most significant meta-analysis in this region
Append your own data and create meta-analysis

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276627 chr6:32743835 HLA-DQB2 [+12524bp] All: C 103,235 14 C vs. T - - 1.16 (1.09-1.23) 3 (0-56) 4.81e-06
Meta_image?name=rs9276627

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276689 chr6:32751962 HLA-DQB2 [+20651bp] C - 12 T vs. C 0.1 (T) - <1 (-) 20 (-) >0.05
rs55857185 chr6:32806084 TAP2 C - 6 C vs. G - - <1 (-) 21 (-) >0.05
rs55738762 chr6:32795981 TAP2 C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs9276731 chr6:32765585 HLA-DOB [-14955bp] C - 12 T vs. G 0.083 (T) - <1 (-) 25 (-) >0.05
rs115225185 chr6:32791391 TAP2 C - 10 T vs. C - - <1 (-) 0 (-) >0.05
rs41270492 chr6:32809965 PSMB8 C - 10 T vs. C 0.017 (T) - >1 (-) 0 (-) >0.05
rs13208583 chr6:32800871 TAP2 C - 12 T vs. C 0.058 (T) - >1 (-) 0 (-) >0.05
rs111673066 chr6:32735964 HLA-DQB2 [+4653bp] C - 10 A vs. G 0.008 (A) - >1 (-) 0 (-) >0.05
rs12527715 chr6:32816998 PSMB9 C - 12 T vs. C 0.117 (C) 0.192 (C) <1 (-) 0 (-) >0.05
rs78084276 chr6:32778326 HLA-DOB [-2214bp] C - 12 T vs. G 0.033 (T) 0.042 (T) <1 (-) 0 (-) >0.05
rs9404998 chr6:32784098 HLA-DOB C - 11 A vs. G 0.017 (A) 0.083 (A) >1 (-) 0 (-) >0.05
rs2621341 chr6:32775213 HLA-DOB [-5327bp] C - 4 C vs. G - 0.008 (C) >1 (-) 0 (-) >0.05
rs115683811 chr6:32747258 HLA-DQB2 [+15947bp] C - 10 A vs. G 0.033 (G) - <1 (-) 0 (-) >0.05
rs6937727 chr6:32766020 HLA-DOB [-14520bp] C - 12 A vs. G 0.267 (G) 0.375 (G) >1 (-) 0 (-) >0.05
rs6938180 chr6:32766014 HLA-DOB [-14526bp] C - 12 A vs. G 0.25 (A) 0.392 (A) <1 (-) 0 (-) >0.05
rs4318925 chr6:32761506 HLA-DOB [-19034bp] C - 12 T vs. C 0.1 (T) 0.075 (T) <1 (-) 11 (-) >0.05
rs2071541 chr6:32812858 PSMB9 C - 12 A vs. G 0.083 (G) 0.175 (G) <1 (-) 0 (-) >0.05
rs1057141 chr6:32818774 PSMB9 C - 12 T vs. C 0.117 (C) 0.192 (C) <1 (-) 0 (-) >0.05
rs2071538 chr6:32818678 PSMB9 C - 12 A vs. G 0.275 (A) 0.408 (A) >1 (-) 41 (-) >0.05
rs4947349 chr6:32747790 HLA-DQB2 [+16479bp] C - 12 T vs. G 0.092 (T) - <1 (-) 9 (-) >0.05
rs6938690 chr6:32831461 PSMB9 [+4099bp] C - 12 T vs. C 0.35 (T) 0.325 (T) >1 (-) 12 (-) >0.05
rs17429444 chr6:32786068 HLA-DOB [+1243bp] C - 12 A vs. G 0.067 (G) 0.067 (G) <1 (-) 52 (-) >0.05
rs16871018 chr6:32813691 PSMB9 C - 8 T vs. C 0.008 (T) - >1 (-) 36 (-) >0.05
rs4947258 chr6:32747502 HLA-DQB2 [+16191bp] C - 12 A vs. G 0.092 (G) - >1 (-) 7 (-) >0.05
rs17213728 chr6:32781954 HLA-DOB C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs241431 chr6:32802351 TAP2 C - 12 T vs. C 0.05 (C) - >1 (-) 26 (-) >0.05
rs111594182 chr6:32790718 TAP2 C - 12 A vs. G - - <1 (-) 0 (-) >0.05
rs115924989 chr6:32828639 PSMB9 [+1277bp] C - 10 A vs. G 0.017 (A) - >1 (-) 0 (-) >0.05
rs115303597 chr6:32743648 HLA-DQB2 [+12337bp] C - 12 T vs. C 0.025 (T) - <1 (-) 0 (-) >0.05
rs151102334 chr6:32743495 HLA-DQB2 [+12184bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs4148881 chr6:32818432 PSMB9 C - 12 A vs. C 0.033 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs114912314 chr6:32830958 PSMB9 [+3596bp] C - 12 T vs. C 0.042 (T) 0.042 (T) >1 (-) 0 (-) >0.05
rs62396666 chr6:32740618 HLA-DQB2 [+9307bp] C - 11 A vs. G - - >1 (-) 1 (-) >0.05
rs9368744 chr6:32798299 TAP2 C - 11 T vs. C - 0.092 (T) >1 (-) 0 (-) >0.05
rs138082244 chr6:32801325 TAP2 C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs150463293 chr6:32755842 HLA-DQB2 [+24531bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs114311872 chr6:32812736 PSMB9 C - 12 T vs. C 0.017 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs2395269 chr6:32817774 PSMB9 C - 12 T vs. G 0.1 (G) 0.192 (G) <1 (-) 0 (-) >0.05
rs36229526 chr6:32820656 PSMB9 C - 12 T vs. G 0.058 (T) - >1 (-) 0 (-) >0.05
rs113206908 chr6:32818030 PSMB9 C - 11 T vs. C 0.017 (C) - <1 (-) 28 (-) >0.05
rs6930981 chr6:32826450 PSMB9 C - 12 T vs. C 0.367 (C) 0.333 (C) <1 (-) 13 (-) >0.05
rs118033438 chr6:32753873 HLA-DQB2 [+22562bp] C - 6 A vs. T - 0.042 (A) >1 (-) 0 (-) >0.05
rs11967235 chr6:32781433 HLA-DOB C - 12 T vs. C 0.017 (T) - >1 (-) 0 (-) >0.05
rs77227620 chr6:32819751 PSMB9 C - 12 T vs. G 0.075 (T) 0.175 (T) >1 (-) 0 (-) >0.05
rs6938130 chr6:32831247 PSMB9 [+3885bp] C - 12 A vs. T 0.35 (T) 0.325 (T) <1 (-) 0 (-) >0.05
rs4148879 chr6:32819478 PSMB9 C - 12 A vs. G 0.075 (A) 0.175 (A) >1 (-) 0 (-) >0.05
rs1383268 chr6:32833366 PSMB9 [+6004bp] C - 12 A vs. C 0.342 (A) 0.192 (A) >1 (-) 5 (-) >0.05
rs112845110 chr6:32738847 HLA-DQB2 [+7536bp] C - 3 A vs. G - - >1 (-) 0 (-) >0.05
rs41317090 chr6:32802354 TAP2 C - 11 A vs. C 0.05 (A) - <1 (-) 31 (-) >0.05
rs1383270 chr6:32833256 PSMB9 [+5894bp] C - 12 A vs. G 0.342 (A) 0.333 (A) >1 (-) 4 (-) >0.05

Association studies for this region [+]