HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9271423 chr6:32587897 HLA-DQA1 [-8059bp] C - 11 T vs. G 0.2 (G) 0.175 (G) <1 (-) 59 (-) <0.05
rs9270819 chr6:32569972 HLA-DRB1 [+12347bp] C - 4 T vs. C - - >1 (-) 0 (-) <0.05
rs2856678 chr6:32655830 HLA-DQB1 [+19670bp] C - 10 A vs. T 0.275 (A) 0.375 (A) <1 (-) 0 (-) <0.05
rs9270822 chr6:32570025 HLA-DRB1 [+12400bp] C - 4 T vs. C - - <1 (-) 0 (-) <0.05
rs9275218 chr6:32658933 HLA-DQB1 [+22773bp] C - 12 C vs. G 0.358 (G) 0.458 (G) >1 (-) 0 (-) <0.05
rs9270918 chr6:32572302 HLA-DRB1 [+14677bp] C - 3 A vs. G - - <1 (-) 59 (-) <0.05
rs9270919 chr6:32572305 HLA-DRB1 [+14680bp] C - 3 T vs. G 0.442 (G) - <1 (-) 59 (-) <0.05
rs9271413 chr6:32587768 HLA-DQA1 [-8188bp] C - 11 A vs. G 0.2 (G) 0.15 (G) <1 (-) 59 (-) <0.05
rs4530903 chr6:32581889 HLA-DQA1 [-14067bp] C - 5 T vs. C 0.15 (T) - <1 (-) 0 (-) <0.05
rs4504507 chr6:32582288 HLA-DQA1 [-13668bp] C - 5 T vs. C 0.142 (T) 0.025 (T) <1 (-) 0 (-) <0.05
rs56838463 chr6:32581225 HLA-DQA1 [-14731bp] C - 5 A vs. C 0.142 (C) - >1 (-) 0 (-) <0.05
rs34471348 chr6:32581175 HLA-DQA1 [-14781bp] C - 5 T vs. C 0.142 (C) 0.025 (C) >1 (-) 0 (-) <0.05
rs55873471 chr6:32581712 HLA-DQA1 [-14244bp] C - 5 A vs. G 0.142 (G) 0.025 (G) >1 (-) 0 (-) <0.05
rs35421715 chr6:32581456 HLA-DQA1 [-14500bp] C - 5 A vs. G 0.142 (G) 0.025 (G) >1 (-) 0 (-) <0.05
rs4404800 chr6:32581913 HLA-DQA1 [-14043bp] C - 5 A vs. G 0.142 (G) 0.025 (G) >1 (-) 0 (-) <0.05
rs9271211 chr6:32579078 HLA-DQA1 [-16878bp] C - 5 T vs. C - - <1 (-) 20 (-) <0.05
rs9271212 chr6:32579079 HLA-DQA1 [-16877bp] C - 5 A vs. G - - >1 (-) 20 (-) <0.05
rs9270817 chr6:32569911 HLA-DRB1 [+12286bp] C - 4 A vs. G 0.342 (A) 0.183 (A) >1 (-) 0 (-) <0.05
rs9271493 chr6:32589158 HLA-DQA1 [-6798bp] C - 4 A vs. G 0.492 (A) 0.408 (A) >1 (-) 0 (-) <0.05
rs9270805 chr6:32569556 HLA-DRB1 [+11931bp] C - 4 A vs. T 0.35 (T) 0.208 (T) <1 (-) 0 (-) <0.05
rs9271210 chr6:32579070 HLA-DQA1 [-16886bp] C - 5 T vs. C - - <1 (-) 22 (-) <0.05
rs9270950 chr6:32573027 HLA-DRB1 [+15402bp] C - 3 A vs. T 0.408 (T) 0.225 (T) <1 (-) 61 (-) <0.05
rs9271213 chr6:32579211 HLA-DQA1 [-16745bp] C - 5 C vs. G 0.367 (G) 0.183 (G) <1 (-) 23 (-) <0.05
rs113195871 chr6:32580640 HLA-DQA1 [-15316bp] C - 5 A vs. T 0.133 (A) - <1 (-) 0 (-) <0.05
rs2858330 chr6:32658715 HLA-DQB1 [+22555bp] C - 12 T vs. C 0.425 (C) - >1 (-) 32 (-) <0.05
rs9270816 chr6:32569879 HLA-DRB1 [+12254bp] C - 4 T vs. G 0.35 (T) 0.183 (T) >1 (-) 0 (-) <0.05
rs9270810 chr6:32569659 HLA-DRB1 [+12034bp] C - 4 T vs. C 0.35 (T) 0.2 (T) >1 (-) 0 (-) <0.05
rs7754464 chr6:32657818 HLA-DQB1 [+21658bp] C - 12 A vs. G 0.442 (G) 0.267 (A) >1 (-) 28 (-) <0.05
rs9275289 chr6:32663208 HLA-DQB1 [+27048bp] C - 12 A vs. C 0.342 (C) 0.492 (A) >1 (-) 0 (-) <0.05
rs9270893 chr6:32571845 HLA-DRB1 [+14220bp] C - 4 T vs. C 0.425 (C) 0.183 (C) <1 (-) 29 (-) <0.05
rs72850069 chr6:32580454 HLA-DQA1 [-15502bp] C - 5 T vs. G 0.133 (G) 0.025 (G) >1 (-) 0 (-) <0.05
rs5000634 chr6:32663564 HLA-DQB1 [+27404bp] C - 12 A vs. G 0.375 (G) 0.475 (A) >1 (-) 0 (-) <0.05
rs6457619 chr6:32663986 HLA-DQB1 [+27826bp] C - 12 C vs. G 0.383 (G) 0.483 (C) >1 (-) 0 (-) <0.05
rs4642516 chr6:32657543 HLA-DQB1 [+21383bp] C - 12 T vs. G 0.433 (T) 0.267 (G) <1 (-) 31 (-) <0.05
rs9275274 chr6:32662566 HLA-DQB1 [+26406bp] C - 12 C vs. G - - <1 (-) 0 (-) <0.05
rs9271366 chr6:32586854 HLA-DQA1 [-9102bp] C - 11 A vs. G 0.2 (G) 0.133 (G) <1 (-) 60 (-) <0.05
rs33964890 chr6:32583919 HLA-DQA1 [-12037bp] C - 4 T vs. C 0.358 (C) 0.242 (C) >1 (-) 0 (-) <0.05
rs9271588 chr6:32590953 HLA-DQA1 [-5003bp] C - 9 T vs. C 0.425 (T) 0.483 (T) >1 (-) 44 (-) <0.05
rs9271587 chr6:32590916 HLA-DQA1 [-5040bp] C - 9 A vs. G 0.425 (A) 0.467 (A) >1 (-) 44 (-) <0.05
rs9270800 chr6:32569335 HLA-DRB1 [+11710bp] C - 3 T vs. C - - >1 (-) 33 (-) <0.05
rs3129712 chr6:32657200 HLA-DQB1 [+21040bp] C - 10 A vs. T 0.258 (A) 0.392 (A) <1 (-) 0 (-) <0.05
rs9275273 chr6:32662559 HLA-DQB1 [+26399bp] C - 12 A vs. C - - <1 (-) 0 (-) <0.05
rs9271234 chr6:32579549 HLA-DQA1 [-16407bp] C - 5 A vs. G - - <1 (-) 38 (-) <0.05
rs72850042 chr6:32576811 HLA-DQA1 [-19145bp] C - 4 T vs. C 0.183 (T) - <1 (-) 43 (-) <0.05
rs9275272 chr6:32662546 HLA-DQB1 [+26386bp] C - 12 C vs. G - - <1 (-) 0 (-) <0.05
rs2856668 chr6:32663606 HLA-DQB1 [+27446bp] C - 12 C vs. G 0.433 (G) 0.242 (G) <1 (-) 38 (-) <0.05
rs522308 chr6:32581922 HLA-DQA1 [-14034bp] C - 4 T vs. C 0.417 (T) 0.1 (T) <1 (-) 0 (-) <0.05
rs2647016 chr6:32663925 HLA-DQB1 [+27765bp] C - 12 A vs. C 0.417 (C) 0.233 (C) <1 (-) 37 (-) <0.05
rs9271382 chr6:32587375 HLA-DQA1 [-8581bp] C - 4 A vs. G 0.492 (G) 0.467 (A) <1 (-) 5 (-) <0.05
rs3129720 chr6:32663631 HLA-DQB1 [+27471bp] C - 12 T vs. C 0.3 (T) 0.158 (T) >1 (-) 27 (-) <0.05

Association studies for this region [+]