HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
Meta_image?name=rs532965

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9271184 chr6:32578285 HLA-DQA1 [-17671bp] C - 4 A vs. C - - >1 (-) 48 (-) <0.05
rs2858320 chr6:32661293 HLA-DQB1 [+25133bp] C - 12 A vs. G 0.45 (A) 0.408 (A) >1 (-) 33 (-) <0.05
rs2647021 chr6:32663151 HLA-DQB1 [+26991bp] C - 12 T vs. C - - >1 (-) 38 (-) <0.05
rs2894378 chr6:32580880 HLA-DQA1 [-15076bp] C - 5 A vs. G 0.35 (G) 0.183 (G) <1 (-) 41 (-) <0.05
rs140012631 chr6:32579334 HLA-DQA1 [-16622bp] C - 5 T vs. C - - <1 (-) 0 (-) <0.05
rs72850056 chr6:32579077 HLA-DQA1 [-16879bp] C - 5 A vs. G 0.167 (A) - <1 (-) 0 (-) <0.05
rs9270811 chr6:32569721 HLA-DRB1 [+12096bp] C - 4 A vs. G - - >1 (-) 26 (-) <0.05
rs2858317 chr6:32662280 HLA-DQB1 [+26120bp] C - 12 A vs. C - - <1 (-) 39 (-) <0.05
rs3997874 chr6:32580741 HLA-DQA1 [-15215bp] C - 5 A vs. G 0.342 (A) 0.183 (A) >1 (-) 40 (-) <0.05
rs9271240 chr6:32579833 HLA-DQA1 [-16123bp] C - 5 T vs. C - - >1 (-) 42 (-) <0.05
rs9275180 chr6:32654278 HLA-DQB1 [+18118bp] C - 10 T vs. C - - <1 (-) 38 (-) <0.05
rs2856689 chr6:32654551 HLA-DQB1 [+18391bp] C - 10 A vs. G 0.417 (G) 0.267 (A) >1 (-) 32 (-) <0.05
rs9271241 chr6:32579870 HLA-DQA1 [-16086bp] C - 5 A vs. G - - <1 (-) 41 (-) <0.05
rs9270813 chr6:32569790 HLA-DRB1 [+12165bp] C - 4 T vs. C 0.35 (C) 0.192 (C) <1 (-) 25 (-) <0.05
rs9271242 chr6:32579940 HLA-DQA1 [-16016bp] C - 5 T vs. C 0.35 (T) 0.183 (T) >1 (-) 42 (-) <0.05
rs9271243 chr6:32579951 HLA-DQA1 [-16005bp] C - 5 T vs. C 0.35 (C) 0.192 (C) <1 (-) 42 (-) <0.05
rs685810 chr6:32584952 HLA-DQA1 [-11004bp] C - 3 A vs. G 0.392 (G) 0.167 (G) >1 (-) 0 (-) <0.05
rs2856690 chr6:32654536 HLA-DQB1 [+18376bp] C - 10 A vs. T 0.425 (A) 0.267 (T) <1 (-) 30 (-) <0.05
rs9271258 chr6:32580446 HLA-DQA1 [-15510bp] C - 5 A vs. G 0.342 (G) 0.2 (G) <1 (-) 42 (-) <0.05
rs9271257 chr6:32580444 HLA-DQA1 [-15512bp] C - 5 A vs. G 0.342 (G) 0.217 (G) <1 (-) 42 (-) <0.05
rs28752526 chr6:32584918 HLA-DQA1 [-11038bp] C - 3 A vs. G - - >1 (-) 0 (-) <0.05
rs113176001 chr6:32571483 HLA-DRB1 [+13858bp] C - 4 C vs. G - - <1 (-) 51 (-) <0.05
rs9271247 chr6:32580112 HLA-DQA1 [-15844bp] C - 5 A vs. G 0.35 (A) 0.183 (A) >1 (-) 44 (-) <0.05
rs2856670 chr6:32662904 HLA-DQB1 [+26744bp] C - 12 C vs. G 0.425 (G) 0.25 (G) <1 (-) 35 (-) <0.05
rs9271144 chr6:32577220 HLA-DQA1 [-18736bp] C - 4 A vs. G 0.342 (G) 0.2 (G) <1 (-) 15 (-) <0.05
rs13191810 chr6:32586831 HLA-DQA1 [-9125bp] C - 3 T vs. C 0.283 (T) 0.158 (T) <1 (-) 41 (-) <0.05
rs9271145 chr6:32577224 HLA-DQA1 [-18732bp] C - 4 C vs. G 0.358 (C) 0.2 (C) >1 (-) 14 (-) <0.05
rs28383313 chr6:32587117 HLA-DQA1 [-8839bp] C - 3 C vs. G 0.375 (G) 0.375 (G) >1 (-) 0 (-) <0.05
rs9271260 chr6:32580507 HLA-DQA1 [-15449bp] C - 5 A vs. C 0.342 (A) 0.183 (A) >1 (-) 42 (-) <0.05
rs13213821 chr6:32585199 HLA-DQA1 [-10757bp] C - 3 A vs. G - - >1 (-) 0 (-) <0.05
rs9271248 chr6:32580157 HLA-DQA1 [-15799bp] C - 5 T vs. C 0.367 (C) 0.183 (C) <1 (-) 45 (-) <0.05
rs9271576 chr6:32590612 HLA-DQA1 [-5344bp] C - 3 T vs. C 0.342 (C) 0.317 (C) >1 (-) 0 (-) <0.05
rs9271151 chr6:32577474 HLA-DQA1 [-18482bp] C - 4 T vs. G 0.383 (T) 0.2 (T) >1 (-) 9 (-) <0.05
rs9271150 chr6:32577470 HLA-DQA1 [-18486bp] C - 4 T vs. G 0.392 (T) 0.183 (T) >1 (-) 10 (-) <0.05
rs9273356 chr6:32625989 HLA-DQB1 [-1255bp] C - 3 A vs. G - - >1 (-) 45 (-) <0.05
rs2856684 chr6:32655095 HLA-DQB1 [+18935bp] C - 10 T vs. C 0.45 (C) 0.267 (T) >1 (-) 37 (-) <0.05
rs9273380 chr6:32626895 HLA-DQB1 [-349bp] C - 3 A vs. G - - <1 (-) 42 (-) <0.05
rs9271246 chr6:32580084 HLA-DQA1 [-15872bp] C - 5 A vs. G 0.35 (A) 0.183 (A) >1 (-) 44 (-) <0.05
rs3997871 chr6:32580456 HLA-DQA1 [-15500bp] C - 5 A vs. G 0.342 (G) 0.183 (G) <1 (-) 42 (-) <0.05
rs28752534 chr6:32585068 HLA-DQA1 [-10888bp] C - 3 T vs. C 0.35 (C) 0.175 (C) >1 (-) 25 (-) <0.05
rs9271112 chr6:32576717 HLA-DRB1 [+19092bp] C - 4 T vs. C - - >1 (-) 46 (-) <0.05
rs9271367 chr6:32586908 HLA-DQA1 [-9048bp] C - 10 A vs. G 0.358 (G) 0.233 (G) <1 (-) 28 (-) <0.05
rs9270904 chr6:32572060 HLA-DRB1 [+14435bp] C - 4 T vs. C - - >1 (-) 55 (-) <0.05
rs9271111 chr6:32576699 HLA-DRB1 [+19074bp] C - 4 A vs. G 0.392 (G) 0.25 (G) <1 (-) 45 (-) <0.05
rs9270905 chr6:32572076 HLA-DRB1 [+14451bp] C - 4 A vs. G - - <1 (-) 57 (-) <0.05
rs9273417 chr6:32627352 HLA-DQB1 C - 5 A vs. G 0.5 (A) 0.45 (A) >1 (-) 26 (-) <0.05
rs9271375 chr6:32587067 HLA-DQA1 [-8889bp] C - 3 A vs. G 0.483 (A) 0.217 (A) <1 (-) 18 (-) <0.05
rs3998180 chr6:32650897 HLA-DQB1 [+14737bp] C - 3 A vs. C 0.133 (A) 0.033 (A) <1 (-) 0 (-) <0.05
rs2858318 chr6:32661302 HLA-DQB1 [+25142bp] C - 12 T vs. G 0.425 (T) 0.267 (T) >1 (-) 40 (-) <0.05
rs9271117 chr6:32576795 HLA-DQA1 [-19161bp] C - 4 T vs. C 0.408 (C) 0.233 (C) <1 (-) 45 (-) <0.05

Association studies for this region [+]