HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
Meta_image?name=rs532965

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9273443 chr6:32627600 HLA-DQB1 C - 7 T vs. G 0.492 (G) 0.433 (G) <1 (-) 32 (-) <0.05
rs3828790 chr6:32635809 HLA-DQB1 C - 4 T vs. C 0.492 (T) 0.467 (T) >1 (-) 0 (-) <0.05
rs112500757 chr6:32574186 HLA-DRB1 [+16561bp] C - 4 T vs. C 0.15 (T) 0.025 (T) <1 (-) 5 (-) <0.05
rs35488182 chr6:32574048 HLA-DRB1 [+16423bp] C - 4 A vs. G 0.142 (A) - <1 (-) 6 (-) <0.05
rs9271223 chr6:32579372 HLA-DQA1 [-16584bp] C - 5 T vs. C 0.458 (T) - >1 (-) 46 (-) <0.05
rs35752949 chr6:32574329 HLA-DRB1 [+16704bp] C - 4 T vs. C 0.142 (T) - <1 (-) 5 (-) <0.05
rs59108952 chr6:32574244 HLA-DRB1 [+16619bp] C - 4 T vs. C 0.142 (T) 0.025 (T) <1 (-) 5 (-) <0.05
rs61670843 chr6:32574453 HLA-DRB1 [+16828bp] C - 4 T vs. C 0.142 (T) 0.025 (T) <1 (-) 5 (-) <0.05
rs61161997 chr6:32574614 HLA-DRB1 [+16989bp] C - 4 A vs. C 0.158 (C) 0.025 (C) >1 (-) 7 (-) <0.05
rs9275168 chr6:32653676 HLA-DQB1 [+17516bp] C - 10 T vs. C 0.45 (C) 0.225 (T) >1 (-) 40 (-) <0.05
rs3129719 chr6:32661779 HLA-DQB1 [+25619bp] C - 11 T vs. G 0.292 (T) 0.125 (T) >1 (-) 34 (-) <0.05
rs60216782 chr6:32574643 HLA-DRB1 [+17018bp] C - 4 C vs. G 0.167 (G) - >1 (-) 7 (-) <0.05
rs72850021 chr6:32573895 HLA-DRB1 [+16270bp] C - 4 A vs. G 0.142 (G) - >1 (-) 5 (-) <0.05
rs9273373 chr6:32626601 HLA-DQB1 [-643bp] C - 3 A vs. G - - >1 (-) 37 (-) <0.05
rs55703642 chr6:32578198 HLA-DQA1 [-17758bp] C - 5 T vs. C 0.142 (C) - >1 (-) 1 (-) <0.05
rs1140347 chr6:32628022 HLA-DQB1 C - 7 A vs. G 0.475 (A) 0.467 (A) >1 (-) 37 (-) <0.05
rs9275277 chr6:32662677 HLA-DQB1 [+26517bp] C - 12 A vs. G 0.483 (A) 0.475 (G) <1 (-) 27 (-) <0.05
rs9275292 chr6:32663289 HLA-DQB1 [+27129bp] C - 12 A vs. C 0.492 (A) 0.433 (C) <1 (-) 23 (-) <0.05
rs1063345 chr6:32627976 HLA-DQB1 C - 7 A vs. G 0.492 (G) 0.492 (A) <1 (-) 36 (-) <0.05
rs5000633 chr6:32663610 HLA-DQB1 [+27450bp] C - 12 A vs. C 0.492 (A) 0.425 (C) <1 (-) 25 (-) <0.05
rs36022997 chr6:32573361 HLA-DRB1 [+15736bp] C - 4 A vs. C 0.142 (C) - >1 (-) 5 (-) <0.05
rs9271218 chr6:32579327 HLA-DQA1 [-16629bp] C - 5 T vs. G - - <1 (-) 45 (-) <0.05
rs9273427 chr6:32627441 HLA-DQB1 C - 7 A vs. C - - >1 (-) 31 (-) >0.05
rs9273376 chr6:32626801 HLA-DQB1 [-443bp] C - 3 T vs. C - - <1 (-) 43 (-) >0.05
rs67838634 chr6:32662128 HLA-DQB1 [+25968bp] C - 12 A vs. G - - >1 (-) 20 (-) >0.05
rs9275177 chr6:32654174 HLA-DQB1 [+18014bp] C - 10 T vs. C 0.458 (T) 0.2 (C) <1 (-) 42 (-) >0.05
rs9275178 chr6:32654181 HLA-DQB1 [+18021bp] C - 10 A vs. G 0.467 (A) 0.2 (G) <1 (-) 42 (-) >0.05
rs9274677 chr6:32636639 HLA-DQB1 [+479bp] C - 4 T vs. C 0.242 (C) 0.433 (T) >1 (-) 0 (-) >0.05
rs9273479 chr6:32628093 HLA-DQB1 C - 7 T vs. C 0.442 (C) 0.292 (T) >1 (-) 39 (-) >0.05
rs3828798 chr6:32636038 HLA-DQB1 C - 4 A vs. T - - >1 (-) 0 (-) >0.05
rs9273374 chr6:32626614 HLA-DQB1 [-630bp] C - 3 A vs. G 0.475 (G) 0.467 (A) >1 (-) 41 (-) >0.05
rs9275276 chr6:32662676 HLA-DQB1 [+26516bp] C - 12 T vs. C 0.483 (C) 0.483 (C) >1 (-) 27 (-) >0.05
rs9275169 chr6:32653721 HLA-DQB1 [+17561bp] C - 10 A vs. T 0.45 (A) 0.208 (T) <1 (-) 41 (-) >0.05
rs9275170 chr6:32653726 HLA-DQB1 [+17566bp] C - 10 A vs. G 0.442 (A) 0.208 (G) <1 (-) 41 (-) >0.05
rs9275295 chr6:32663391 HLA-DQB1 [+27231bp] C - 12 A vs. G 0.492 (G) 0.442 (A) >1 (-) 23 (-) >0.05
rs111914578 chr6:32575115 HLA-DRB1 [+17490bp] C - 4 A vs. C - - >1 (-) 10 (-) >0.05
rs9275286 chr6:32663143 HLA-DQB1 [+26983bp] C - 12 T vs. C - - >1 (-) 26 (-) >0.05
rs17533090 chr6:32590722 HLA-DQA1 [-5234bp] C - 8 T vs. G 0.192 (T) 0.142 (T) >1 (-) 49 (-) >0.05
rs6457617 chr6:32663851 HLA-DQB1 [+27691bp] C - 12 T vs. C 0.492 (C) 0.45 (C) <1 (-) 20 (-) >0.05
rs75483390 chr6:32585749 HLA-DQA1 [-10207bp] C - 3 A vs. G 0.008 (A) 0.05 (A) <1 (-) 0 (-) >0.05
rs9271365 chr6:32586794 HLA-DQA1 [-9162bp] C - 3 T vs. G 0.392 (G) 0.458 (G) >1 (-) 14 (-) >0.05
rs34629405 chr6:32590696 HLA-DQA1 [-5260bp] C - 8 T vs. C 0.192 (T) 0.142 (T) >1 (-) 49 (-) >0.05
rs3828794 chr6:32635903 HLA-DQB1 C - 4 A vs. G 0.233 (A) 0.4 (A) <1 (-) 0 (-) >0.05
rs9275172 chr6:32653997 HLA-DQB1 [+17837bp] C - 10 A vs. G 0.433 (G) 0.208 (A) >1 (-) 42 (-) >0.05
rs9273482 chr6:32628127 HLA-DQB1 C - 7 T vs. C 0.483 (T) 0.442 (T) >1 (-) 39 (-) >0.05
rs9275173 chr6:32654037 HLA-DQB1 [+17877bp] C - 10 A vs. T 0.467 (A) 0.2 (T) <1 (-) 42 (-) >0.05
rs9274654 chr6:32636280 HLA-DQB1 [+120bp] C - 4 T vs. G 0.183 (T) 0.383 (T) <1 (-) 0 (-) >0.05
rs9274655 chr6:32636289 HLA-DQB1 [+129bp] C - 4 T vs. C 0.183 (C) 0.383 (C) >1 (-) 0 (-) >0.05
rs9275263 chr6:32662344 HLA-DQB1 [+26184bp] C - 12 A vs. G - - >1 (-) 34 (-) >0.05
rs9275260 chr6:32661575 HLA-DQB1 [+25415bp] C - 12 T vs. C 0.492 (T) 0.442 (C) <1 (-) 21 (-) >0.05

Association studies for this region [+]