HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
Meta_image?name=rs532965

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275284 chr6:32663073 HLA-DQB1 [+26913bp] C - 12 T vs. C 0.492 (T) 0.408 (C) <1 (-) 25 (-) >0.05
rs36233208 chr6:32577606 HLA-DQA1 [-18350bp] C - 5 T vs. G 0.142 (T) - <1 (-) 3 (-) >0.05
rs9274619 chr6:32635954 HLA-DQB1 C - 4 A vs. G 0.175 (A) 0.092 (A) <1 (-) 0 (-) >0.05
rs9271219 chr6:32579354 HLA-DQA1 [-16602bp] C - 5 T vs. C 0.442 (C) - <1 (-) 47 (-) >0.05
rs201449386 chr6:32662239 HLA-DQB1 [+26079bp] C - 12 T vs. C - - >1 (-) 21 (-) >0.05
rs9271220 chr6:32579355 HLA-DQA1 [-16601bp] C - 5 A vs. G 0.442 (A) - >1 (-) 47 (-) >0.05
rs9274656 chr6:32636351 HLA-DQB1 [+191bp] C - 4 T vs. C 0.217 (C) 0.475 (T) >1 (-) 0 (-) >0.05
rs9274688 chr6:32636900 HLA-DQB1 [+740bp] C - 4 T vs. C 0.292 (T) 0.408 (T) <1 (-) 0 (-) >0.05
rs3828809 chr6:32636172 HLA-DQB1 [+12bp] C - 4 T vs. C 0.217 (T) 0.467 (C) <1 (-) 0 (-) >0.05
rs35406945 chr6:32577695 HLA-DQA1 [-18261bp] C - 5 A vs. C 0.142 (C) 0.025 (C) >1 (-) 4 (-) >0.05
rs9271611 chr6:32591609 HLA-DQA1 [-4347bp] C - 9 A vs. G 0.308 (G) 0.258 (G) <1 (-) 37 (-) >0.05
rs2395522 chr6:32664722 HLA-DQB1 [+28562bp] C - 12 A vs. T 0.492 (A) 0.408 (A) >1 (-) 21 (-) >0.05
rs34113780 chr6:32575258 HLA-DRB1 [+17633bp] C - 4 A vs. G 0.142 (G) 0.025 (G) >1 (-) 13 (-) >0.05
rs9275259 chr6:32661572 HLA-DQB1 [+25412bp] C - 12 A vs. C 0.475 (A) 0.433 (C) <1 (-) 21 (-) >0.05
rs9275266 chr6:32662392 HLA-DQB1 [+26232bp] C - 12 C vs. G - - <1 (-) 28 (-) >0.05
rs56245106 chr6:32577846 HLA-DQA1 [-18110bp] C - 5 T vs. C 0.142 (C) 0.025 (C) >1 (-) 6 (-) >0.05
rs9275239 chr6:32660717 HLA-DQB1 [+24557bp] C - 12 A vs. G 0.45 (A) 0.5 (A) <1 (-) 20 (-) >0.05
rs9275265 chr6:32662389 HLA-DQB1 [+26229bp] C - 12 T vs. C - - <1 (-) 29 (-) >0.05
rs9270948 chr6:32572972 HLA-DRB1 [+15347bp] C - 3 T vs. C 0.408 (C) 0.225 (C) <1 (-) 72 (-) >0.05
rs9270949 chr6:32572975 HLA-DRB1 [+15350bp] C - 3 T vs. C 0.4 (T) 0.225 (T) >1 (-) 72 (-) >0.05
rs2647024 chr6:32636184 HLA-DQB1 [+24bp] C - 4 T vs. C 0.192 (T) 0.233 (T) <1 (-) 0 (-) >0.05
rs9270953 chr6:32573045 HLA-DRB1 [+15420bp] C - 3 T vs. C - - <1 (-) 73 (-) >0.05
rs34342308 chr6:32590665 HLA-DQA1 [-5291bp] C - 8 A vs. G 0.192 (G) 0.142 (G) <1 (-) 50 (-) >0.05
rs9275271 chr6:32662533 HLA-DQB1 [+26373bp] C - 12 T vs. C - - >1 (-) 26 (-) >0.05
rs72844346 chr6:32662033 HLA-DQB1 [+25873bp] C - 12 A vs. G - - >1 (-) 23 (-) >0.05
rs9275212 chr6:32658327 HLA-DQB1 [+22167bp] C - 12 T vs. G 0.458 (G) 0.233 (G) <1 (-) 41 (-) >0.05
rs9275261 chr6:32661809 HLA-DQB1 [+25649bp] C - 12 T vs. C - - >1 (-) 25 (-) >0.05
rs9270954 chr6:32573058 HLA-DRB1 [+15433bp] C - 3 T vs. C - - <1 (-) 73 (-) >0.05
rs9275282 chr6:32662974 HLA-DQB1 [+26814bp] C - 12 T vs. C 0.492 (T) 0.417 (C) <1 (-) 22 (-) >0.05
rs111391378 chr6:32662024 HLA-DQB1 [+25864bp] C - 12 A vs. G - - >1 (-) 23 (-) >0.05
rs28535317 chr6:32589065 HLA-DQA1 [-6891bp] C - 4 A vs. G 0.142 (G) 0.025 (G) >1 (-) 14 (-) >0.05
rs9272236 chr6:32602702 HLA-DQA1 C - 4 T vs. C 0.15 (C) 0.192 (C) <1 (-) 0 (-) >0.05
rs73730369 chr6:32584133 HLA-DQA1 [-11823bp] C - 3 T vs. C 0.017 (C) 0.108 (C) >1 (-) 0 (-) >0.05
rs72850016 chr6:32572940 HLA-DRB1 [+15315bp] C - 4 A vs. G 0.133 (G) 0.025 (G) >1 (-) 15 (-) >0.05
rs9272225 chr6:32602372 HLA-DQA1 C - 4 T vs. G 0.158 (T) 0.192 (T) >1 (-) 0 (-) >0.05
rs202170080 chr6:32662240 HLA-DQB1 [+26080bp] C - 12 A vs. G - - <1 (-) 22 (-) >0.05
rs36233212 chr6:32575820 HLA-DRB1 [+18195bp] C - 4 T vs. C 0.142 (C) 0.017 (C) >1 (-) 15 (-) >0.05
rs3828787 chr6:32635743 HLA-DQB1 C - 4 T vs. C 0.183 (C) 0.317 (C) >1 (-) 0 (-) >0.05
rs9270807 chr6:32569572 HLA-DRB1 [+11947bp] C - 4 A vs. G 0.233 (A) 0.425 (G) >1 (-) 23 (-) >0.05
rs3828788 chr6:32635749 HLA-DQB1 C - 4 A vs. G - - >1 (-) 0 (-) >0.05
rs77015620 chr6:32583783 HLA-DQA1 [-12173bp] C - 3 A vs. G 0.017 (G) 0.117 (G) >1 (-) 0 (-) >0.05
rs9272219 chr6:32602269 HLA-DQA1 C - 4 T vs. G 0.158 (T) 0.192 (T) >1 (-) 0 (-) >0.05
rs9270925 chr6:32572433 HLA-DRB1 [+14808bp] C - 3 A vs. G - - >1 (-) 72 (-) >0.05
rs9270926 chr6:32572435 HLA-DRB1 [+14810bp] C - 3 A vs. C - - <1 (-) 72 (-) >0.05
rs28638783 chr6:32572737 HLA-DRB1 [+15112bp] C - 4 A vs. G 0.142 (A) - <1 (-) 16 (-) >0.05
rs2856687 chr6:32654822 HLA-DQB1 [+18662bp] C - 10 T vs. C 0.417 (T) 0.258 (T) >1 (-) 25 (-) >0.05
rs3129761 chr6:32585504 HLA-DQA1 [-10452bp] C - 4 C vs. G 0.408 (C) 0.458 (G) <1 (-) 21 (-) >0.05
rs9274701 chr6:32637181 HLA-DQB1 [+1021bp] C - 4 T vs. G 0.3 (G) 0.375 (G) >1 (-) 1 (-) >0.05
rs9275269 chr6:32662459 HLA-DQB1 [+26299bp] C - 12 A vs. G - - >1 (-) 24 (-) >0.05
rs9274700 chr6:32637180 HLA-DQB1 [+1020bp] C - 4 A vs. G 0.292 (G) 0.367 (G) >1 (-) 1 (-) >0.05

Association studies for this region [+]