HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
Meta_image?name=rs532965

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs3134970 chr6:32654202 HLA-DQB1 [+18042bp] C - 4 T vs. C 0.292 (T) 0.133 (T) >1 (-) 0 (-) >0.05
rs34455295 chr6:32591183 HLA-DQA1 [-4773bp] C - 8 A vs. G 0.192 (A) 0.142 (A) >1 (-) 51 (-) >0.05
rs11751024 chr6:32586236 HLA-DQA1 [-9720bp] C - 3 A vs. C 0.383 (A) 0.3 (A) <1 (-) 17 (-) >0.05
rs502771 chr6:32578970 HLA-DQA1 [-16986bp] C - 4 T vs. C 0.142 (C) 0.375 (C) <1 (-) 0 (-) >0.05
rs502055 chr6:32579003 HLA-DQA1 [-16953bp] C - 4 T vs. C 0.15 (C) 0.383 (C) <1 (-) 0 (-) >0.05
rs3134998 chr6:32636757 HLA-DQB1 [+597bp] C - 4 T vs. C 0.45 (T) 0.167 (T) >1 (-) 51 (-) >0.05
rs17612809 chr6:32620459 HLA-DQA1 [+5620bp] C - 3 T vs. C 0.492 (T) 0.467 (T) <1 (-) 0 (-) >0.05
rs9274712 chr6:32637298 HLA-DQB1 [+1138bp] C - 4 T vs. C 0.292 (T) 0.475 (T) <1 (-) 20 (-) >0.05
rs17612748 chr6:32620174 HLA-DQA1 [+5335bp] C - 3 A vs. G 0.5 (G) 0.458 (A) >1 (-) 0 (-) >0.05
rs9275243 chr6:32660784 HLA-DQB1 [+24624bp] C - 12 C vs. G 0.458 (G) 0.467 (C) >1 (-) 21 (-) >0.05
rs9274728 chr6:32637772 HLA-DQB1 [+1612bp] C - 4 A vs. G 0.283 (G) 0.425 (G) >1 (-) 31 (-) >0.05
rs9275254 chr6:32661209 HLA-DQB1 [+25049bp] C - 12 T vs. G 0.433 (G) 0.433 (T) >1 (-) 21 (-) >0.05
rs9275255 chr6:32661246 HLA-DQB1 [+25086bp] C - 12 A vs. T 0.483 (A) 0.417 (T) <1 (-) 21 (-) >0.05
rs9275253 chr6:32661204 HLA-DQB1 [+25044bp] C - 12 T vs. C 0.45 (T) 0.45 (C) <1 (-) 21 (-) >0.05
rs17843608 chr6:32620454 HLA-DQA1 [+5615bp] C - 3 A vs. C 0.467 (C) 0.458 (C) >1 (-) 0 (-) >0.05
rs115035141 chr6:32580032 HLA-DQA1 [-15924bp] C - 3 T vs. C - 0.108 (T) <1 (-) 0 (-) >0.05
rs116714077 chr6:32580019 HLA-DQA1 [-15937bp] C - 3 T vs. C - 0.125 (T) <1 (-) 0 (-) >0.05
rs3134996 chr6:32636866 HLA-DQB1 [+706bp] C - 4 A vs. T 0.433 (A) 0.167 (A) >1 (-) 53 (-) >0.05
rs4382332 chr6:32572155 HLA-DRB1 [+14530bp] C - 4 T vs. C 0.142 (C) 0.025 (C) >1 (-) 26 (-) >0.05
rs9275244 chr6:32660881 HLA-DQB1 [+24721bp] C - 12 T vs. G 0.483 (T) 0.417 (G) <1 (-) 20 (-) >0.05
rs9275236 chr6:32660601 HLA-DQB1 [+24441bp] C - 11 A vs. G 0.467 (G) 0.467 (A) >1 (-) 17 (-) >0.05
rs9274691 chr6:32636957 HLA-DQB1 [+797bp] C - 4 T vs. C - - >1 (-) 49 (-) >0.05
rs9272255 chr6:32603133 HLA-DQA1 C - 3 T vs. C 0.15 (T) 0.183 (T) >1 (-) 15 (-) >0.05
rs1626993 chr6:32636991 HLA-DQB1 [+831bp] C - 4 A vs. T - - >1 (-) 50 (-) >0.05
rs112396255 chr6:32591469 HLA-DQA1 [-4487bp] C - 8 A vs. G 0.192 (G) 0.133 (G) <1 (-) 52 (-) >0.05
rs9275238 chr6:32660689 HLA-DQB1 [+24529bp] C - 12 A vs. G - 0.467 (A) >1 (-) 19 (-) >0.05
rs34682574 chr6:32591370 HLA-DQA1 [-4586bp] C - 8 C vs. G 0.183 (G) 0.117 (G) <1 (-) 52 (-) >0.05
rs9275100 chr6:32649308 HLA-DQB1 [+13148bp] C - 5 A vs. G 0.267 (G) 0.367 (G) >1 (-) 0 (-) >0.05
rs9275093 chr6:32649047 HLA-DQB1 [+12887bp] C - 5 T vs. C 0.258 (T) 0.383 (T) <1 (-) 0 (-) >0.05
rs9274692 chr6:32636958 HLA-DQB1 [+798bp] C - 4 A vs. T - - <1 (-) 50 (-) >0.05
rs9275094 chr6:32649062 HLA-DQB1 [+12902bp] C - 5 T vs. C 0.242 (C) 0.383 (C) >1 (-) 0 (-) >0.05
rs28614783 chr6:32582434 HLA-DQA1 [-13522bp] C - 3 T vs. C 0.017 (T) 0.117 (T) <1 (-) 0 (-) >0.05
rs34185260 chr6:32591388 HLA-DQA1 [-4568bp] C - 8 A vs. G 0.183 (G) 0.142 (G) <1 (-) 52 (-) >0.05
rs112466823 chr6:32660104 HLA-DQB1 [+23944bp] C - 8 T vs. C 0.017 (T) 0.133 (T) >1 (-) 0 (-) >0.05
rs112032264 chr6:32660115 HLA-DQB1 [+23955bp] C - 8 C vs. G 0.017 (C) 0.133 (C) >1 (-) 0 (-) >0.05
rs9275096 chr6:32649096 HLA-DQB1 [+12936bp] C - 5 T vs. C 0.267 (T) 0.383 (T) <1 (-) 0 (-) >0.05
rs9272224 chr6:32602352 HLA-DQA1 C - 4 T vs. C 0.15 (T) 0.192 (T) >1 (-) 0 (-) >0.05
rs17612802 chr6:32620359 HLA-DQA1 [+5520bp] C - 3 T vs. C 0.483 (T) 0.458 (T) <1 (-) 0 (-) >0.05
rs80343249 chr6:32580268 HLA-DQA1 [-15688bp] C - 3 A vs. G 0.008 (A) 0.1 (A) <1 (-) 0 (-) >0.05
rs9274693 chr6:32636972 HLA-DQB1 [+812bp] C - 4 T vs. C 0.375 (T) 0.333 (C) <1 (-) 50 (-) >0.05
rs9274696 chr6:32637007 HLA-DQB1 [+847bp] C - 4 C vs. G - - <1 (-) 51 (-) >0.05
rs9274697 chr6:32637016 HLA-DQB1 [+856bp] C - 4 A vs. G 0.4 (G) 0.333 (A) >1 (-) 51 (-) >0.05
rs9275104 chr6:32649388 HLA-DQB1 [+13228bp] C - 5 T vs. C 0.242 (C) 0.358 (C) >1 (-) 0 (-) >0.05
rs17612788 chr6:32620344 HLA-DQA1 [+5505bp] C - 3 A vs. G 0.433 (A) 0.45 (G) <1 (-) 0 (-) >0.05
rs9272261 chr6:32603242 HLA-DQA1 C - 3 A vs. G 0.15 (A) 0.183 (A) >1 (-) 16 (-) >0.05
rs9275107 chr6:32649508 HLA-DQB1 [+13348bp] C - 5 A vs. G 0.25 (G) 0.367 (G) >1 (-) 0 (-) >0.05
rs9274690 chr6:32636940 HLA-DQB1 [+780bp] C - 4 A vs. C 0.4 (C) 0.342 (A) >1 (-) 51 (-) >0.05
rs17843607 chr6:32620435 HLA-DQA1 [+5596bp] C - 3 A vs. G 0.492 (A) 0.442 (G) <1 (-) 0 (-) >0.05
rs34575141 chr6:32626697 HLA-DQB1 [-547bp] C - 3 A vs. G 0.025 (A) 0.058 (A) >1 (-) 0 (-) >0.05
rs4713589 chr6:32659435 HLA-DQB1 [+23275bp] C - 11 A vs. G - - <1 (-) 40 (-) >0.05

Association studies for this region [+]