HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
Meta_image?name=rs532965

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9271529 chr6:32589937 HLA-DQA1 [-6019bp] C - 8 A vs. G - - >1 (-) 58 (-) >0.05
rs9274683 chr6:32636780 HLA-DQB1 [+620bp] C - 4 A vs. G 0.433 (A) 0.342 (G) <1 (-) 51 (-) >0.05
rs9274684 chr6:32636785 HLA-DQB1 [+625bp] C - 4 T vs. C 0.442 (T) 0.342 (C) <1 (-) 51 (-) >0.05
rs9275217 chr6:32658867 HLA-DQB1 [+22707bp] C - 11 A vs. G - - >1 (-) 30 (-) >0.05
rs3104412 chr6:32585967 HLA-DQA1 [-9989bp] C - 3 A vs. G 0.4 (G) 0.45 (A) >1 (-) 49 (-) >0.05
rs9275232 chr6:32660574 HLA-DQB1 [+24414bp] C - 12 A vs. C 0.442 (A) 0.492 (C) <1 (-) 19 (-) >0.05
rs9274689 chr6:32636930 HLA-DQB1 [+770bp] C - 4 T vs. C 0.433 (C) 0.333 (T) >1 (-) 52 (-) >0.05
rs4566915 chr6:32571891 HLA-DRB1 [+14266bp] C - 4 A vs. G 0.142 (A) - <1 (-) 32 (-) >0.05
rs9275242 chr6:32660774 HLA-DQB1 [+24614bp] C - 12 T vs. C 0.492 (T) 0.458 (C) <1 (-) 24 (-) >0.05
rs9271187 chr6:32578314 HLA-DQA1 [-17642bp] C - 5 T vs. C - - <1 (-) 0 (-) >0.05
rs9274735 chr6:32637896 HLA-DQB1 [+1736bp] C - 4 A vs. G 0.225 (A) 0.333 (A) <1 (-) 37 (-) >0.05
rs2858864 chr6:32578229 HLA-DQA1 [-17727bp] C - 5 T vs. C 0.142 (T) 0.383 (T) >1 (-) 0 (-) >0.05
rs36233210 chr6:32577417 HLA-DQA1 [-18539bp] C - 4 T vs. G 0.15 (G) 0.025 (G) >1 (-) 29 (-) >0.05
rs28510673 chr6:32569506 HLA-DRB1 [+11881bp] C - 4 T vs. G 0.142 (T) 0.025 (T) <1 (-) 28 (-) >0.05
rs4380799 chr6:32571864 HLA-DRB1 [+14239bp] C - 4 T vs. G 0.15 (G) 0.025 (G) >1 (-) 31 (-) >0.05
rs9271190 chr6:32578369 HLA-DQA1 [-17587bp] C - 5 A vs. C 0.142 (A) 0.383 (A) >1 (-) 0 (-) >0.05
rs17843611 chr6:32620531 HLA-DQA1 [+5692bp] C - 3 T vs. C - - >1 (-) 0 (-) >0.05
rs9274685 chr6:32636844 HLA-DQB1 [+684bp] C - 4 T vs. C 0.433 (C) 0.342 (T) >1 (-) 51 (-) >0.05
rs9275245 chr6:32660943 HLA-DQB1 [+24783bp] C - 12 A vs. G 0.492 (A) 0.408 (A) >1 (-) 20 (-) >0.05
rs17843610 chr6:32620529 HLA-DQA1 [+5690bp] C - 3 T vs. C - - >1 (-) 0 (-) >0.05
rs28567460 chr6:32569513 HLA-DRB1 [+11888bp] C - 4 C vs. G 0.142 (C) 0.025 (C) <1 (-) 29 (-) >0.05
rs17612774 chr6:32620286 HLA-DQA1 [+5447bp] C - 3 T vs. C 0.45 (C) 0.442 (C) >1 (-) 0 (-) >0.05
rs17843604 chr6:32620283 HLA-DQA1 [+5444bp] C - 3 T vs. C 0.442 (T) 0.433 (T) <1 (-) 0 (-) >0.05
rs28383311 chr6:32587011 HLA-DQA1 [-8945bp] C - 3 A vs. T 0.258 (T) 0.042 (T) >1 (-) 16 (-) >0.05
rs17843605 chr6:32620391 HLA-DQA1 [+5552bp] C - 3 T vs. G 0.492 (G) 0.417 (G) <1 (-) 0 (-) >0.05
rs9272208 chr6:32601967 HLA-DQA1 C - 4 A vs. G - - <1 (-) 0 (-) >0.05
rs17843606 chr6:32620399 HLA-DQA1 [+5560bp] C - 3 T vs. G 0.483 (T) 0.417 (G) <1 (-) 0 (-) >0.05
rs72847585 chr6:32569802 HLA-DRB1 [+12177bp] C - 4 A vs. C 0.15 (A) 0.025 (A) <1 (-) 33 (-) >0.05
rs9274687 chr6:32636882 HLA-DQB1 [+722bp] C - 4 T vs. C 0.442 (T) 0.325 (C) <1 (-) 52 (-) >0.05
rs9275235 chr6:32660587 HLA-DQB1 [+24427bp] C - 11 A vs. G - - >1 (-) 18 (-) >0.05
rs17843615 chr6:32620663 HLA-DQA1 [+5824bp] C - 3 T vs. C 0.483 (C) - >1 (-) 0 (-) >0.05
rs28605404 chr6:32569687 HLA-DRB1 [+12062bp] C - 4 A vs. G 0.142 (G) 0.025 (G) >1 (-) 33 (-) >0.05
rs9275248 chr6:32661135 HLA-DQB1 [+24975bp] C - 12 A vs. G - - >1 (-) 26 (-) >0.05
rs674313 chr6:32578082 HLA-DQA1 [-17874bp] C - 4 T vs. C 0.117 (T) 0.275 (T) >1 (-) 0 (-) >0.05
rs73728240 chr6:32582320 HLA-DQA1 [-13636bp] C - 3 A vs. T 0.017 (T) 0.117 (T) >1 (-) 0 (-) >0.05
rs112574398 chr6:32658610 HLA-DQB1 [+22450bp] C - 10 T vs. G - 0.108 (T) >1 (-) 0 (-) >0.05
rs9272271 chr6:32603526 HLA-DQA1 C - 3 A vs. T 0.133 (T) 0.167 (T) <1 (-) 28 (-) >0.05
rs9275250 chr6:32661141 HLA-DQB1 [+24981bp] C - 12 T vs. C - - <1 (-) 25 (-) >0.05
rs116147199 chr6:32658355 HLA-DQB1 [+22195bp] C - 10 A vs. G - 0.092 (G) <1 (-) 0 (-) >0.05
rs114996593 chr6:32658360 HLA-DQB1 [+22200bp] C - 10 T vs. C 0.008 (C) 0.083 (C) <1 (-) 0 (-) >0.05
rs9275231 chr6:32660505 HLA-DQB1 [+24345bp] C - 12 T vs. C 0.5 (T) 0.458 (T) >1 (-) 23 (-) >0.05
rs9271712 chr6:32593432 HLA-DQA1 [-2524bp] C - 3 A vs. G - 0.35 (A) >1 (-) 0 (-) >0.05
rs17843603 chr6:32620241 HLA-DQA1 [+5402bp] C - 3 A vs. G 0.5 (G) 0.45 (G) <1 (-) 0 (-) >0.05
rs34704034 chr6:32581929 HLA-DQA1 [-14027bp] C - 3 A vs. G 0.017 (G) 0.117 (G) >1 (-) 0 (-) >0.05
rs56361357 chr6:32581996 HLA-DQA1 [-13960bp] C - 3 A vs. C 0.008 (A) 0.058 (A) <1 (-) 0 (-) >0.05
rs7754496 chr6:32657893 HLA-DQB1 [+21733bp] C - 10 A vs. T - 0.133 (T) <1 (-) 0 (-) >0.05
rs9274702 chr6:32637184 HLA-DQB1 [+1024bp] C - 4 A vs. C - - <1 (-) 54 (-) >0.05
rs7775055 chr6:32657916 HLA-DQB1 [+21756bp] C - 10 T vs. C - 0.133 (C) <1 (-) 0 (-) >0.05
rs9272273 chr6:32603583 HLA-DQA1 C - 3 A vs. G 0.133 (G) 0.183 (G) <1 (-) 30 (-) >0.05
rs28595756 chr6:32589772 HLA-DQA1 [-6184bp] C - 8 T vs. C 0.192 (C) 0.133 (C) <1 (-) 56 (-) >0.05

Association studies for this region [+]