HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
Meta_image?name=rs532965

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs72847586 chr6:32570172 HLA-DRB1 [+12547bp] C - 4 T vs. C 0.15 (C) - >1 (-) 34 (-) >0.05
rs35759989 chr6:32581096 HLA-DQA1 [-14860bp] C - 3 T vs. C - 0.117 (C) >1 (-) 1 (-) >0.05
rs111841857 chr6:32571508 HLA-DRB1 [+13883bp] C - 4 A vs. G - - <1 (-) 32 (-) >0.05
rs72847588 chr6:32570216 HLA-DRB1 [+12591bp] C - 4 A vs. G 0.15 (A) - <1 (-) 34 (-) >0.05
rs9275251 chr6:32661146 HLA-DQB1 [+24986bp] C - 11 A vs. C - - >1 (-) 31 (-) >0.05
rs17612781 chr6:32620311 HLA-DQA1 [+5472bp] C - 3 T vs. C 0.483 (T) 0.425 (T) >1 (-) 0 (-) >0.05
rs17612858 chr6:32620622 HLA-DQA1 [+5783bp] C - 3 A vs. T 0.442 (A) 0.433 (A) >1 (-) 0 (-) >0.05
rs9272251 chr6:32602966 HLA-DQA1 C - 3 A vs. G 0.125 (G) 0.167 (G) <1 (-) 10 (-) >0.05
rs9274739 chr6:32637940 HLA-DQB1 [+1780bp] C - 4 A vs. T 0.317 (T) 0.433 (T) >1 (-) 42 (-) >0.05
rs3129783 chr6:32655730 HLA-DQB1 [+19570bp] C - 8 A vs. G 0.433 (A) 0.35 (A) >1 (-) 35 (-) >0.05
rs17612795 chr6:32620348 HLA-DQA1 [+5509bp] C - 3 A vs. T 0.392 (T) 0.183 (T) >1 (-) 0 (-) >0.05
rs4713580 chr6:32659994 HLA-DQB1 [+23834bp] C - 12 T vs. C 0.492 (C) 0.408 (C) <1 (-) 20 (-) >0.05
rs9272274 chr6:32603599 HLA-DQA1 C - 3 T vs. C 0.117 (T) 0.183 (T) >1 (-) 31 (-) >0.05
rs9274695 chr6:32636997 HLA-DQB1 [+837bp] C - 4 T vs. C - - <1 (-) 54 (-) >0.05
rs5002707 chr6:32659337 HLA-DQB1 [+23177bp] C - 11 T vs. C - - >1 (-) 30 (-) >0.05
rs113666293 chr6:32656477 HLA-DQB1 [+20317bp] C - 9 C vs. G - 0.125 (C) >1 (-) 0 (-) >0.05
rs28409699 chr6:32571295 HLA-DRB1 [+13670bp] C - 4 T vs. C 0.133 (T) - <1 (-) 35 (-) >0.05
rs4713581 chr6:32660023 HLA-DQB1 [+23863bp] C - 12 T vs. C 0.492 (T) 0.433 (T) >1 (-) 19 (-) >0.05
rs4713582 chr6:32660051 HLA-DQB1 [+23891bp] C - 12 T vs. C 0.492 (T) 0.45 (T) >1 (-) 19 (-) >0.05
rs72847591 chr6:32570494 HLA-DRB1 [+12869bp] C - 4 T vs. C 0.15 (T) 0.017 (T) <1 (-) 36 (-) >0.05
rs9274705 chr6:32637245 HLA-DQB1 [+1085bp] C - 4 A vs. G - - <1 (-) 57 (-) >0.05
rs3129758 chr6:32584625 HLA-DQA1 [-11331bp] C - 4 A vs. G 0.442 (A) 0.317 (A) >1 (-) 56 (-) >0.05
rs1794510 chr6:32652171 HLA-DQB1 [+16011bp] C - 3 A vs. C - 0.142 (A) >1 (-) 0 (-) >0.05
rs36231348 chr6:32592083 HLA-DQA1 [-3873bp] C - 8 A vs. G 0.208 (A) 0.133 (A) >1 (-) 54 (-) >0.05
rs9271648 chr6:32592358 HLA-DQA1 [-3598bp] C - 8 T vs. C 0.375 (T) 0.175 (T) >1 (-) 58 (-) >0.05
rs4248168 chr6:32659743 HLA-DQB1 [+23583bp] C - 12 C vs. G 0.492 (G) 0.392 (G) <1 (-) 17 (-) >0.05
rs9275109 chr6:32649676 HLA-DQB1 [+13516bp] C - 6 T vs. G 0.383 (G) 0.175 (G) <1 (-) 0 (-) >0.05
rs3134993 chr6:32637778 HLA-DQB1 [+1618bp] C - 4 A vs. G 0.45 (G) 0.358 (G) <1 (-) 60 (-) >0.05
rs12526612 chr6:32653598 HLA-DQB1 [+17438bp] C - 6 A vs. G 0.133 (A) 0.033 (A) <1 (-) 12 (-) >0.05
rs9275237 chr6:32660612 HLA-DQB1 [+24452bp] C - 11 A vs. C 0.492 (A) 0.467 (C) <1 (-) 26 (-) >0.05
rs28635450 chr6:32592633 HLA-DQA1 [-3323bp] C - 3 A vs. T - - >1 (-) 0 (-) >0.05
rs9274713 chr6:32637341 HLA-DQB1 [+1181bp] C - 4 T vs. C - - <1 (-) 56 (-) >0.05
rs9274715 chr6:32637391 HLA-DQB1 [+1231bp] C - 4 A vs. G - - <1 (-) 58 (-) >0.05
rs9469220 chr6:32658310 HLA-DQB1 [+22150bp] C - 9 A vs. G 0.408 (A) 0.358 (G) >1 (-) 45 (-) >0.05
rs9274731 chr6:32637823 HLA-DQB1 [+1663bp] C - 4 A vs. G 0.383 (G) 0.392 (A) >1 (-) 56 (-) >0.05
rs9274732 chr6:32637825 HLA-DQB1 [+1665bp] C - 4 A vs. G 0.392 (A) 0.392 (G) <1 (-) 56 (-) >0.05
rs28421666 chr6:32592737 HLA-DQA1 [-3219bp] C - 3 A vs. G - 0.067 (G) <1 (-) 0 (-) >0.05
rs9274710 chr6:32637287 HLA-DQB1 [+1127bp] C - 4 C vs. G - - >1 (-) 59 (-) >0.05
rs116359969 chr6:32592110 HLA-DQA1 [-3846bp] C - 8 A vs. G 0.208 (G) - <1 (-) 55 (-) >0.05
rs9272213 chr6:32602039 HLA-DQA1 C - 4 A vs. T - - >1 (-) 0 (-) >0.05
rs9275227 chr6:32660337 HLA-DQB1 [+24177bp] C - 11 C vs. G 0.483 (G) 0.483 (C) >1 (-) 24 (-) >0.05
rs9275228 chr6:32660347 HLA-DQB1 [+24187bp] C - 11 A vs. G 0.5 (G) 0.492 (G) <1 (-) 24 (-) >0.05
rs9274730 chr6:32637817 HLA-DQB1 [+1657bp] C - 4 A vs. G 0.417 (A) 0.367 (G) <1 (-) 58 (-) >0.05
rs9272215 chr6:32602105 HLA-DQA1 C - 4 T vs. G 0.142 (T) - >1 (-) 0 (-) >0.05
rs34947241 chr6:32592239 HLA-DQA1 [-3717bp] C - 8 T vs. C 0.2 (C) 0.158 (C) <1 (-) 56 (-) >0.05
rs9272206 chr6:32601933 HLA-DQA1 C - 3 T vs. C - 0.108 (T) >1 (-) 0 (-) >0.05
rs114441380 chr6:32601533 HLA-DQA1 C - 3 A vs. T 0.158 (T) 0.142 (T) >1 (-) 21 (-) >0.05
rs9275224 chr6:32659878 HLA-DQB1 [+23718bp] C - 11 A vs. G 0.492 (A) 0.408 (A) >1 (-) 25 (-) >0.05
rs114169440 chr6:32662921 HLA-DQB1 [+26761bp] C - 3 A vs. C 0.125 (A) 0.033 (A) >1 (-) 0 (-) >0.05
rs5002702 chr6:32659158 HLA-DQB1 [+22998bp] C - 11 A vs. G 0.5 (G) 0.45 (G) <1 (-) 29 (-) >0.05

Association studies for this region [+]