HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9271222 chr6:32579365 HLA-DQA1 [-16591bp] All: C 52,167 6 C vs. T 0.225 (C) - 1.22 (1.12-1.33) 39 (0-76) 3.89e-06
rs9271065 chr6:32575619 HLA-DRB1 [+17994bp] C - 4 C vs. G 0.217 (C) 0.108 (C) >1 (-) 17 (-) <1.00e-04
rs9271124 chr6:32576846 HLA-DQA1 [-19110bp] All: C 11,858 4 T vs. C - - 0.75 (0.67-0.85) 22 (0-88) 4.08e-06
rs9271125 chr6:32576865 HLA-DQA1 [-19091bp] All: C 11,858 4 A vs. G - - 0.75 (0.67-0.85) 21 (0-88) 4.10e-06
rs9275122 chr6:32650233 HLA-DQB1 [+14073bp] All: C 96,330 13 C vs. T 0.258 (C) 0.392 (C) 0.88 (0.83-0.93) 0 (0-24) 4.38e-06
rs9271256 chr6:32580411 HLA-DQA1 [-15545bp] All: C 52,167 6 A vs. G 0.217 (A) 0.158 (A) 1.17 (1.10-1.26) 55 (0-82) 4.47e-06
rs3129750 chr6:32581515 HLA-DQA1 [-14441bp] All: C 52,167 6 G vs. A 0.217 (G) 0.167 (G) 1.18 (1.10-1.26) 55 (0-82) 4.58e-06
rs9271126 chr6:32576873 HLA-DQA1 [-19083bp] All: C 11,858 4 T vs. G - - 0.76 (0.67-0.85) 22 (0-88) 5.02e-06
rs35558953 chr6:32583056 HLA-DQA1 [-12900bp] All: C 11,858 4 T vs. C 0.483 (T) 0.3 (T) 0.78 (0.70-0.87) 0 (0-66) 5.26e-06
rs9271770 chr6:32594248 HLA-DQA1 [-1708bp] C - 3 A vs. G 0.217 (G) 0.233 (G) <1 (-) 5 (-) <1.00e-04
rs9271349 chr6:32583830 HLA-DQA1 [-12126bp] All: C 52,167 6 A vs. G 0.233 (A) 0.267 (A) 1.18 (1.10-1.27) 39 (0-76) 5.97e-06
rs9275147 chr6:32651557 HLA-DQB1 [+15397bp] All: C 96,330 13 T vs. C 0.267 (T) 0.4 (T) 0.89 (0.85-0.94) 0 (0-9) 6.22e-06
rs9275132 chr6:32650500 HLA-DQB1 [+14340bp] All: C 96,330 13 A vs. G 0.267 (A) 0.4 (A) 0.88 (0.83-0.93) 0 (0-18) 6.63e-06
rs2516049 chr6:32570400 HLA-DRB1 [+12775bp] All: C 35,908 11 C vs. T 0.392 (C) 0.167 (C) 0.90 (0.86-0.94) 0 (0-41) 6.77e-06
rs2454138 chr6:32570401 HLA-DRB1 [+12776bp] All: C 35,908 11 A vs. G 0.367 (A) 0.15 (A) 0.90 (0.86-0.94) 0 (0-41) 6.89e-06
rs9271351 chr6:32583860 HLA-DQA1 [-12096bp] C - 5 C vs. G 0.2 (C) 0.15 (C) >1 (-) 28 (-) <1.00e-04
rs9275117 chr6:32649965 HLA-DQB1 [+13805bp] All: C 96,330 13 C vs. T - - 1.14 (1.08-1.21) 0 (0-21) 8.12e-06
rs9275115 chr6:32649941 HLA-DQB1 [+13781bp] All: C 96,330 13 C vs. T 0.267 (C) - 0.88 (0.83-0.93) 0 (0-22) 8.37e-06
rs9275140 chr6:32651018 HLA-DQB1 [+14858bp] All: C 96,330 13 A vs. G 0.267 (A) 0.408 (A) 0.89 (0.85-0.94) 0 (0-14) 8.43e-06
rs3997873 chr6:32580723 HLA-DQA1 [-15233bp] All: C 52,167 6 G vs. T 0.208 (G) 0.15 (G) 1.18 (1.10-1.26) 45 (0-78) 8.81e-06
rs4367411 chr6:32571929 HLA-DRB1 [+14304bp] All: C 45,262 5 C vs. T 0.267 (C) - 1.24 (1.13-1.36) 59 (0-85) 9.45e-06
rs9271116 chr6:32576764 HLA-DRB1 [+19139bp] All: C 45,262 5 T vs. G 0.217 (T) 0.158 (T) 1.22 (1.12-1.34) 62 (0-86) 9.92e-06
rs9275165 chr6:32652956 HLA-DQB1 [+16796bp] All: C 93,567 12 G vs. A 0.292 (G) 0.45 (G) 0.89 (0.85-0.94) 0 (0-21) 1.04e-05
rs9275113 chr6:32649825 HLA-DQB1 [+13665bp] All: C 95,137 12 G vs. A 0.267 (G) 0.408 (G) 0.87 (0.82-0.93) 0 (0-29) 1.05e-05
rs9275179 chr6:32654275 HLA-DQB1 [+18115bp] All: C 93,567 12 A vs. G - - 1.12 (1.06-1.17) 0 (0-18) 1.06e-05
rs9275181 chr6:32654325 HLA-DQB1 [+18165bp] All: C 93,567 12 G vs. A 0.267 (G) 0.417 (G) 0.90 (0.85-0.94) 0 (0-18) 1.07e-05
rs2856692 chr6:32653385 HLA-DQB1 [+17225bp] All: C 93,567 12 G vs. T 0.267 (G) 0.433 (G) 0.90 (0.85-0.94) 0 (0-20) 1.10e-05
rs4478449 chr6:32571801 HLA-DRB1 [+14176bp] All: C 45,262 5 A vs. G 0.25 (A) 0.425 (A) 1.24 (1.12-1.36) 57 (0-84) 1.12e-05
rs2856688 chr6:32654640 HLA-DQB1 [+18480bp] All: C 93,567 12 T vs. G 0.267 (T) 0.408 (T) 0.90 (0.86-0.94) 0 (0-18) 1.19e-05
rs2856683 chr6:32655218 HLA-DQB1 [+19058bp] All: C 93,567 12 G vs. T 0.267 (G) 0.433 (G) 0.90 (0.86-0.94) 0 (0-15) 1.27e-05
rs9275157 chr6:32652552 HLA-DQB1 [+16392bp] All: C 96,330 13 A vs. G 0.275 (A) 0.467 (A) 0.90 (0.85-0.94) 0 (0-13) 1.30e-05
rs9271347 chr6:32583543 HLA-DQA1 [-12413bp] All: C 52,167 6 A vs. G 0.208 (A) 0.158 (A) 1.18 (1.09-1.27) 36 (0-75) 1.32e-05
rs13193700 chr6:32575078 HLA-DRB1 [+17453bp] All: C 70,102 3 C vs. T - - 1.13 (1.07-1.20) 0 (-) 1.41e-05
rs13193606 chr6:32575044 HLA-DRB1 [+17419bp] All: C 70,102 3 C vs. T - - 1.13 (1.07-1.19) 0 (0-4) 1.43e-05
rs9275150 chr6:32651617 HLA-DQB1 [+15457bp] All: C 95,137 12 G vs. A 0.25 (G) 0.4 (G) 0.86 (0.80-0.92) 0 (0-26) 1.46e-05
rs9271683 chr6:32592950 HLA-DQA1 [-3006bp] All: C 44,247 3 C vs. T 0.242 (C) 0.233 (C) 1.19 (1.10-1.28) 59 (0-88) 1.59e-05
rs9275166 chr6:32652963 HLA-DQB1 [+16803bp] All: C 93,567 12 C vs. T 0.292 (C) 0.442 (C) 0.90 (0.85-0.94) 0 (0-21) 1.61e-05
rs3129756 chr6:32583063 HLA-DQA1 [-12893bp] All: C 45,262 5 A vs. G - - 1.21 (1.11-1.32) 19 (0-83) 1.69e-05
rs9275156 chr6:32652486 HLA-DQB1 [+16326bp] All: C 96,330 13 C vs. T 0.258 (C) 0.458 (C) 0.90 (0.85-0.94) 0 (0-17) 1.76e-05
rs9275164 chr6:32652929 HLA-DQB1 [+16769bp] All: C 93,567 12 C vs. T 0.292 (C) 0.45 (C) 0.90 (0.85-0.94) 0 (0-20) 1.79e-05
rs9270928 chr6:32572461 HLA-DRB1 [+14836bp] All: C 45,262 5 G vs. T 0.208 (G) 0.167 (G) 1.23 (1.12-1.36) 61 (0-85) 1.90e-05
rs9275149 chr6:32651616 HLA-DQB1 [+15456bp] All: C 95,137 12 T vs. C 0.225 (T) 0.4 (T) 0.86 (0.80-0.92) 0 (0-28) 1.99e-05
rs9271732 chr6:32593627 HLA-DQA1 [-2329bp] All: C 44,247 3 G vs. A 0.267 (G) 0.292 (G) 1.20 (1.11-1.31) 53 (0-86) 2.02e-05
rs647035 chr6:32576626 HLA-DRB1 [+19001bp] All: C 75,053 5 A vs. G 0.467 (A) 0.308 (A) 0.89 (0.85-0.94) 41 (0-78) 2.10e-05
rs9275182 chr6:32654390 HLA-DQB1 [+18230bp] All: C 93,567 12 T vs. C 0.267 (T) 0.433 (T) 0.90 (0.86-0.95) 0 (0-21) 2.20e-05
rs3129768 chr6:32595083 HLA-DQA1 [-873bp] C - 3 T vs. G 0.225 (G) 0.233 (G) <1 (-) 31 (-) <1.00e-04
rs3104390 chr6:32595031 HLA-DQA1 [-925bp] C - 3 A vs. T 0.225 (A) 0.25 (A) >1 (-) 29 (-) <1.00e-04
rs9271701 chr6:32593199 HLA-DQA1 [-2757bp] All: C 44,247 3 T vs. C 0.233 (T) 0.267 (T) 1.18 (1.09-1.28) 55 (0-87) 2.35e-05
rs2647059 chr6:32569362 HLA-DRB1 [+11737bp] C - 7 C vs. G - - <1 (-) 0 (-) <1.00e-04
rs3021059 chr6:32652344 HLA-DQB1 [+16184bp] All: C 96,330 13 T vs. C 0.258 (T) 0.442 (T) 0.90 (0.86-0.95) 0 (0-23) 2.66e-05

Association studies for this region [+]