HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
Meta_image?name=rs532965

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs72847158 chr6:32664708 HLA-DQB1 [+28548bp] C - 11 T vs. C 0.133 (C) 0.05 (C) <1 (-) 75 (-) >0.05
rs12528622 chr6:32658259 HLA-DQB1 [+22099bp] C - 8 A vs. G 0.133 (A) 0.075 (A) >1 (-) 69 (-) >0.05
rs9272204 chr6:32601915 HLA-DQA1 C - 3 A vs. G - - >1 (-) 0 (-) >0.05
rs34411532 chr6:32592294 HLA-DQA1 [-3662bp] C - 8 A vs. G 0.2 (A) 0.158 (A) >1 (-) 56 (-) >0.05
rs9272256 chr6:32603169 HLA-DQA1 C - 4 T vs. C 0.15 (C) 0.075 (C) <1 (-) 9 (-) >0.05
rs35230514 chr6:32591861 HLA-DQA1 [-4095bp] C - 8 T vs. C 0.183 (C) 0.133 (C) <1 (-) 56 (-) >0.05
rs12528368 chr6:32653643 HLA-DQB1 [+17483bp] C - 6 T vs. C 0.125 (C) 0.033 (C) >1 (-) 17 (-) >0.05
rs114361720 chr6:32664635 HLA-DQB1 [+28475bp] C - 11 C vs. G 0.133 (C) 0.033 (C) >1 (-) 75 (-) >0.05
rs115255544 chr6:32664628 HLA-DQB1 [+28468bp] C - 11 A vs. G 0.133 (G) 0.033 (G) <1 (-) 75 (-) >0.05
rs6923022 chr6:32664289 HLA-DQB1 [+28129bp] C - 11 T vs. G 0.133 (T) 0.033 (T) >1 (-) 76 (-) >0.05
rs9274725 chr6:32637573 HLA-DQB1 [+1413bp] C - 4 T vs. C 0.433 (T) 0.467 (C) <1 (-) 60 (-) >0.05
rs9272244 chr6:32602860 HLA-DQA1 C - 4 T vs. G - - >1 (-) 11 (-) >0.05
rs35282906 chr6:32657201 HLA-DQB1 [+21041bp] C - 8 A vs. T 0.133 (A) 0.033 (A) >1 (-) 69 (-) >0.05
rs9274717 chr6:32637454 HLA-DQB1 [+1294bp] C - 4 A vs. C 0.442 (A) 0.308 (C) <1 (-) 61 (-) >0.05
rs67887332 chr6:32664399 HLA-DQB1 [+28239bp] C - 11 A vs. G 0.133 (A) 0.05 (A) >1 (-) 75 (-) >0.05
rs4711304 chr6:32660170 HLA-DQB1 [+24010bp] C - 11 T vs. C 0.492 (T) 0.458 (T) >1 (-) 27 (-) >0.05
rs4713583 chr6:32660153 HLA-DQB1 [+23993bp] C - 11 T vs. G 0.492 (T) 0.417 (T) >1 (-) 27 (-) >0.05
rs9272230 chr6:32602602 HLA-DQA1 C - 4 A vs. C 0.125 (A) 0.117 (A) >1 (-) 0 (-) >0.05
rs72848254 chr6:32601375 HLA-DQA1 C - 3 A vs. G 0.183 (G) 0.275 (G) >1 (-) 41 (-) >0.05
rs9272233 chr6:32602686 HLA-DQA1 C - 4 A vs. G 0.142 (A) 0.092 (A) >1 (-) 0 (-) >0.05
rs9274726 chr6:32637593 HLA-DQB1 [+1433bp] C - 4 C vs. G 0.45 (G) 0.317 (C) >1 (-) 61 (-) >0.05
rs9272234 chr6:32602691 HLA-DQA1 C - 4 A vs. G 0.133 (A) 0.092 (A) >1 (-) 0 (-) >0.05
rs9272243 chr6:32602857 HLA-DQA1 C - 4 A vs. G - - <1 (-) 10 (-) >0.05
rs9275225 chr6:32660262 HLA-DQB1 [+24102bp] C - 11 A vs. G 0.475 (A) 0.45 (G) <1 (-) 28 (-) >0.05
rs35725597 chr6:32659112 HLA-DQB1 [+22952bp] C - 8 T vs. C 0.133 (T) - >1 (-) 68 (-) >0.05
rs114744294 chr6:32660866 HLA-DQB1 [+24706bp] C - 8 A vs. G - 0.083 (G) <1 (-) 0 (-) >0.05
rs616187 chr6:32574305 HLA-DRB1 [+16680bp] C - 7 A vs. G 0.2 (A) 0.408 (G) >1 (-) 0 (-) >0.05
rs72848256 chr6:32601531 HLA-DQA1 C - 3 A vs. G 0.158 (G) 0.258 (G) >1 (-) 40 (-) >0.05
rs9272249 chr6:32602952 HLA-DQA1 C - 3 A vs. T 0.117 (A) 0.167 (A) >1 (-) 21 (-) >0.05
rs9272246 chr6:32602903 HLA-DQA1 C - 4 C vs. G 0.133 (C) 0.108 (C) >1 (-) 2 (-) >0.05
rs9274720 chr6:32637479 HLA-DQB1 [+1319bp] C - 4 A vs. G - - <1 (-) 61 (-) >0.05
rs12528365 chr6:32653608 HLA-DQB1 [+17448bp] C - 6 T vs. C - - >1 (-) 12 (-) >0.05
rs5002704 chr6:32659279 HLA-DQB1 [+23119bp] C - 11 T vs. C - - >1 (-) 37 (-) >0.05
rs146335245 chr6:32662357 HLA-DQB1 [+26197bp] C - 6 T vs. C - - <1 (-) 0 (-) >0.05
rs9272247 chr6:32602924 HLA-DQA1 C - 4 A vs. G 0.133 (A) 0.108 (A) >1 (-) 3 (-) >0.05
rs73728598 chr6:32601447 HLA-DQA1 C - 3 A vs. G 0.108 (G) 0.258 (G) >1 (-) 41 (-) >0.05
rs4713587 chr6:32659535 HLA-DQB1 [+23375bp] C - 11 T vs. G 0.492 (G) - <1 (-) 28 (-) >0.05
rs9272248 chr6:32602941 HLA-DQA1 C - 4 A vs. G 0.117 (A) 0.075 (A) >1 (-) 7 (-) >0.05
rs114651315 chr6:32601278 HLA-DQA1 C - 3 T vs. C 0.133 (T) 0.267 (T) <1 (-) 42 (-) >0.05
rs113861133 chr6:32601911 HLA-DQA1 C - 3 A vs. C - - >1 (-) 55 (-) >0.05
rs1620150 chr6:32637798 HLA-DQB1 [+1638bp] C - 4 T vs. C 0.467 (C) 0.358 (T) >1 (-) 63 (-) >0.05
rs111335405 chr6:32655722 HLA-DQB1 [+19562bp] C - 8 A vs. G 0.017 (G) 0.117 (G) <1 (-) 0 (-) >0.05
rs72848251 chr6:32601288 HLA-DQA1 C - 3 A vs. G 0.133 (A) 0.258 (A) <1 (-) 43 (-) >0.05
rs114948848 chr6:32664797 HLA-DQB1 [+28637bp] C - 11 A vs. G 0.133 (G) 0.017 (G) <1 (-) 75 (-) >0.05
rs115074443 chr6:32664795 HLA-DQB1 [+28635bp] C - 11 T vs. C 0.133 (T) 0.042 (T) >1 (-) 75 (-) >0.05
rs115785636 chr6:32664775 HLA-DQB1 [+28615bp] C - 11 C vs. G 0.133 (C) - >1 (-) 75 (-) >0.05
rs5002708 chr6:32659357 HLA-DQB1 [+23197bp] C - 11 T vs. C - - >1 (-) 37 (-) >0.05
rs115594945 chr6:32664771 HLA-DQB1 [+28611bp] C - 11 A vs. G 0.133 (A) - >1 (-) 75 (-) >0.05
rs17427445 chr6:32663764 HLA-DQB1 [+27604bp] C - 11 A vs. G 0.133 (A) 0.025 (A) >1 (-) 76 (-) >0.05
rs35473146 chr6:32663713 HLA-DQB1 [+27553bp] C - 11 A vs. G 0.133 (G) 0.033 (G) <1 (-) 76 (-) >0.05

Association studies for this region [+]