HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
Meta_image?name=rs532965

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs116303320 chr6:32664791 HLA-DQB1 [+28631bp] C - 11 T vs. C 0.117 (T) 0.033 (T) >1 (-) 74 (-) >0.05
rs34135512 chr6:32591876 HLA-DQA1 [-4080bp] C - 8 A vs. G 0.192 (A) 0.142 (A) >1 (-) 58 (-) >0.05
rs4713590 chr6:32659402 HLA-DQB1 [+23242bp] C - 11 T vs. C - - >1 (-) 35 (-) >0.05
rs145649164 chr6:32601918 HLA-DQA1 C - 3 A vs. C - - <1 (-) 57 (-) >0.05
rs35169534 chr6:32663791 HLA-DQB1 [+27631bp] C - 11 A vs. G 0.133 (G) - <1 (-) 76 (-) >0.05
rs147841808 chr6:32601807 HLA-DQA1 C - 3 C vs. G - - >1 (-) 0 (-) >0.05
rs9272320 chr6:32604124 HLA-DQA1 C - 3 A vs. G 0.475 (A) 0.467 (A) <1 (-) 37 (-) >0.05
rs3129759 chr6:32585163 HLA-DQA1 [-10793bp] C - 3 A vs. G - - <1 (-) 70 (-) >0.05
rs9272250 chr6:32602958 HLA-DQA1 C - 3 A vs. T 0.1 (T) 0.175 (T) <1 (-) 25 (-) >0.05
rs17427431 chr6:32663644 HLA-DQB1 [+27484bp] C - 11 A vs. G 0.133 (A) 0.05 (A) >1 (-) 76 (-) >0.05
rs35122881 chr6:32663677 HLA-DQB1 [+27517bp] C - 11 T vs. C 0.133 (T) 0.075 (T) >1 (-) 76 (-) >0.05
rs13206018 chr6:32663497 HLA-DQB1 [+27337bp] C - 11 T vs. C 0.133 (T) 0.075 (T) >1 (-) 76 (-) >0.05
rs149999552 chr6:32658763 HLA-DQB1 [+22603bp] C - 9 T vs. C - - <1 (-) 0 (-) >0.05
rs143607013 chr6:32658807 HLA-DQB1 [+22647bp] C - 9 T vs. C - - >1 (-) 0 (-) >0.05
rs9274734 chr6:32637887 HLA-DQB1 [+1727bp] C - 4 T vs. C 0.417 (C) 0.408 (T) >1 (-) 64 (-) >0.05
rs34531599 chr6:32663978 HLA-DQB1 [+27818bp] C - 11 T vs. C 0.133 (T) 0.033 (T) >1 (-) 75 (-) >0.05
rs35239297 chr6:32663960 HLA-DQB1 [+27800bp] C - 11 A vs. G 0.133 (A) 0.025 (A) >1 (-) 75 (-) >0.05
rs72844311 chr6:32659536 HLA-DQB1 [+23376bp] C - 10 T vs. C 0.133 (T) - >1 (-) 77 (-) >0.05
rs6917212 chr6:32583005 HLA-DQA1 [-12951bp] C - 4 C vs. G 0.292 (G) 0.425 (G) <1 (-) 30 (-) >0.05
rs35900855 chr6:32664038 HLA-DQB1 [+27878bp] C - 11 A vs. G 0.133 (G) 0.033 (G) <1 (-) 75 (-) >0.05
rs145250786 chr6:32658793 HLA-DQB1 [+22633bp] C - 9 A vs. G - - >1 (-) 0 (-) >0.05
rs13198578 chr6:32656352 HLA-DQB1 [+20192bp] C - 8 T vs. C 0.15 (T) 0.025 (T) >1 (-) 69 (-) >0.05
rs147804272 chr6:32662823 HLA-DQB1 [+26663bp] C - 11 T vs. C - - >1 (-) 76 (-) >0.05
rs114567049 chr6:32601719 HLA-DQA1 C - 3 A vs. G 0.183 (A) 0.192 (A) <1 (-) 39 (-) >0.05
rs9271378 chr6:32587300 HLA-DQA1 [-8656bp] C - 3 A vs. G - - >1 (-) 30 (-) >0.05
rs9272190 chr6:32601760 HLA-DQA1 C - 3 A vs. G 0.075 (G) 0.1 (G) <1 (-) 0 (-) >0.05
rs34392107 chr6:32663954 HLA-DQB1 [+27794bp] C - 11 A vs. G 0.133 (A) 0.017 (A) >1 (-) 75 (-) >0.05
rs68067315 chr6:32663340 HLA-DQB1 [+27180bp] C - 11 A vs. G 0.125 (A) 0.075 (A) >1 (-) 76 (-) >0.05
rs35472814 chr6:32659897 HLA-DQB1 [+23737bp] C - 10 T vs. C 0.133 (C) 0.033 (C) <1 (-) 77 (-) >0.05
rs2858862 chr6:32580321 HLA-DQA1 [-15635bp] C - 4 T vs. C 0.125 (T) 0.383 (T) >1 (-) 0 (-) >0.05
rs2647094 chr6:32580322 HLA-DQA1 [-15634bp] C - 4 A vs. G 0.125 (G) 0.4 (G) <1 (-) 0 (-) >0.05
rs9272192 chr6:32601775 HLA-DQA1 C - 3 A vs. G 0.133 (G) 0.1 (G) <1 (-) 0 (-) >0.05
rs28747023 chr6:32654807 HLA-DQB1 [+18647bp] C - 6 A vs. G 0.208 (A) 0.333 (A) >1 (-) 24 (-) >0.05
rs114020256 chr6:32601797 HLA-DQA1 C - 3 A vs. G 0.15 (A) 0.208 (A) <1 (-) 33 (-) >0.05
rs13195522 chr6:32656253 HLA-DQB1 [+20093bp] C - 8 A vs. C - - >1 (-) 69 (-) >0.05
rs34677551 chr6:32663936 HLA-DQB1 [+27776bp] C - 11 A vs. C 0.133 (C) 0.033 (C) <1 (-) 75 (-) >0.05
rs9272191 chr6:32601769 HLA-DQA1 C - 3 T vs. G 0.075 (T) 0.142 (T) >1 (-) 0 (-) >0.05
rs144429915 chr6:32655780 HLA-DQB1 [+19620bp] C - 6 A vs. G - - <1 (-) 0 (-) >0.05
rs4713570 chr6:32626040 HLA-DQB1 [-1204bp] C - 3 T vs. C 0.208 (T) 0.042 (T) <1 (-) 21 (-) >0.05
rs9274753 chr6:32638176 HLA-DQB1 [+2016bp] C - 4 T vs. C 0.383 (T) 0.325 (C) <1 (-) 61 (-) >0.05
rs9274736 chr6:32637905 HLA-DQB1 [+1745bp] C - 4 T vs. C - - >1 (-) 65 (-) >0.05
rs9274749 chr6:32638094 HLA-DQB1 [+1934bp] C - 4 A vs. G 0.375 (A) 0.367 (G) <1 (-) 61 (-) >0.05
rs9274748 chr6:32638086 HLA-DQB1 [+1926bp] C - 4 A vs. G - - <1 (-) 61 (-) >0.05
rs9274758 chr6:32638290 HLA-DQB1 [+2130bp] C - 4 A vs. G 0.35 (G) 0.267 (A) >1 (-) 60 (-) >0.05
rs35062987 chr6:32590735 HLA-DQA1 [-5221bp] C - 8 T vs. C 0.208 (T) 0.267 (T) >1 (-) 62 (-) >0.05
rs9274752 chr6:32638163 HLA-DQB1 [+2003bp] C - 4 A vs. T 0.375 (A) 0.317 (T) <1 (-) 61 (-) >0.05
rs9274733 chr6:32637874 HLA-DQB1 [+1714bp] C - 4 T vs. C 0.433 (T) 0.333 (C) <1 (-) 64 (-) >0.05
rs9274738 chr6:32637909 HLA-DQB1 [+1749bp] C - 4 A vs. C - - >1 (-) 65 (-) >0.05
rs9274751 chr6:32638138 HLA-DQB1 [+1978bp] C - 4 T vs. C - - >1 (-) 61 (-) >0.05
rs9274746 chr6:32638060 HLA-DQB1 [+1900bp] C - 4 A vs. G - - <1 (-) 62 (-) >0.05

Association studies for this region [+]