HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
Meta_image?name=rs532965

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9272169 chr6:32601226 HLA-DQA1 C - 3 A vs. T 0.15 (G) 0.042 (G) >1 (-) 0 (-) >0.05
rs112927854 chr6:32663259 HLA-DQB1 [+27099bp] C - 11 T vs. C - - >1 (-) 76 (-) >0.05
rs9270965 chr6:32573471 HLA-DRB1 [+15846bp] C - 3 A vs. G 0.475 (A) 0.25 (A) >1 (-) 63 (-) >0.05
rs113846532 chr6:32660147 HLA-DQB1 [+23987bp] C - 3 T vs. C - - >1 (-) 37 (-) >0.05
rs615698 chr6:32574190 HLA-DRB1 [+16565bp] C - 4 A vs. G - - <1 (-) 0 (-) >0.05
rs9274760 chr6:32638348 HLA-DQB1 [+2188bp] C - 4 A vs. G 0.408 (G) 0.267 (A) >1 (-) 60 (-) >0.05
rs9274740 chr6:32637968 HLA-DQB1 [+1808bp] C - 4 A vs. T 0.442 (T) 0.325 (A) >1 (-) 63 (-) >0.05
rs9274759 chr6:32638315 HLA-DQB1 [+2155bp] C - 4 A vs. G 0.392 (A) 0.267 (G) <1 (-) 60 (-) >0.05
rs9274744 chr6:32638054 HLA-DQB1 [+1894bp] C - 4 A vs. G - - <1 (-) 62 (-) >0.05
rs9274756 chr6:32638269 HLA-DQB1 [+2109bp] C - 4 A vs. T - - >1 (-) 61 (-) >0.05
rs9274755 chr6:32638262 HLA-DQB1 [+2102bp] C - 4 A vs. G - - <1 (-) 61 (-) >0.05
rs149270899 chr6:32656722 HLA-DQB1 [+20562bp] C - 6 T vs. C - - >1 (-) 0 (-) >0.05
rs9274754 chr6:32638261 HLA-DQB1 [+2101bp] C - 4 T vs. C - - >1 (-) 61 (-) >0.05
rs9274763 chr6:32638427 HLA-DQB1 [+2267bp] C - 4 A vs. T 0.417 (T) 0.267 (A) >1 (-) 60 (-) >0.05
rs615672 chr6:32574171 HLA-DRB1 [+16546bp] C - 7 C vs. G 0.183 (C) 0.4 (G) >1 (-) 0 (-) >0.05
rs9274743 chr6:32638042 HLA-DQB1 [+1882bp] C - 4 A vs. G - - >1 (-) 63 (-) >0.05
rs9274764 chr6:32638490 HLA-DQB1 [+2330bp] C - 4 A vs. G - - >1 (-) 60 (-) >0.05
rs617058 chr6:32574479 HLA-DRB1 [+16854bp] C - 7 T vs. G 0.117 (T) 0.233 (T) >1 (-) 0 (-) >0.05
rs35130600 chr6:32657904 HLA-DQB1 [+21744bp] C - 6 A vs. G 0.033 (A) 0.067 (A) >1 (-) 0 (-) >0.05
rs13194877 chr6:32655548 HLA-DQB1 [+19388bp] C - 8 A vs. G 0.133 (A) 0.033 (A) >1 (-) 71 (-) >0.05
rs114801596 chr6:32663093 HLA-DQB1 [+26933bp] C - 5 T vs. G - 0.092 (G) <1 (-) 0 (-) >0.05
rs115328288 chr6:32661335 HLA-DQB1 [+25175bp] C - 9 A vs. G 0.017 (G) 0.117 (G) <1 (-) 0 (-) >0.05
rs9272178 chr6:32601427 HLA-DQA1 C - 3 C vs. G 0.142 (G) 0.108 (G) <1 (-) 0 (-) >0.05
rs114895478 chr6:32661440 HLA-DQB1 [+25280bp] C - 9 A vs. T 0.008 (T) 0.125 (T) <1 (-) 0 (-) >0.05
rs115962869 chr6:32661432 HLA-DQB1 [+25272bp] C - 9 T vs. G 0.008 (G) 0.125 (G) <1 (-) 0 (-) >0.05
rs1794523 chr6:32659192 HLA-DQB1 [+23032bp] C - 6 A vs. C 0.025 (A) 0.05 (A) >1 (-) 0 (-) >0.05
rs9272181 chr6:32601563 HLA-DQA1 C - 3 A vs. G 0.133 (A) 0.108 (A) >1 (-) 0 (-) >0.05
rs1049225 chr6:32627747 HLA-DQB1 C - 6 A vs. G 0.275 (A) 0.125 (A) >1 (-) 34 (-) >0.05
rs2395521 chr6:32601700 HLA-DQA1 C - 3 T vs. C 0.142 (T) 0.083 (T) >1 (-) 0 (-) >0.05
rs9272260 chr6:32603236 HLA-DQA1 C - 3 A vs. T 0.133 (A) 0.108 (A) >1 (-) 41 (-) >0.05
rs9272188 chr6:32601688 HLA-DQA1 C - 3 C vs. G 0.142 (G) 0.067 (G) <1 (-) 0 (-) >0.05
rs72844343 chr6:32660993 HLA-DQB1 [+24833bp] C - 8 A vs. T 0.117 (T) - <1 (-) 70 (-) >0.05
rs9272173 chr6:32601268 HLA-DQA1 C - 3 T vs. C 0.15 (C) 0.067 (C) <1 (-) 0 (-) >0.05
rs9272184 chr6:32601617 HLA-DQA1 C - 3 T vs. C 0.142 (C) 0.067 (C) <1 (-) 0 (-) >0.05
rs9274741 chr6:32637994 HLA-DQB1 [+1834bp] C - 4 T vs. C 0.467 (C) 0.192 (T) >1 (-) 65 (-) >0.05
rs583177 chr6:32579567 HLA-DQA1 [-16389bp] C - 4 A vs. C 0.142 (A) 0.375 (A) >1 (-) 0 (-) >0.05
rs7774434 chr6:32657578 HLA-DQB1 [+21418bp] C - 10 T vs. C 0.433 (C) 0.492 (C) >1 (-) 23 (-) >0.05
rs9272176 chr6:32601333 HLA-DQA1 C - 3 T vs. C 0.142 (T) 0.05 (T) >1 (-) 0 (-) >0.05
rs28746919 chr6:32649806 HLA-DQB1 [+13646bp] C - 4 A vs. G 0.125 (A) 0.283 (A) >1 (-) 63 (-) >0.05
rs9272264 chr6:32603309 HLA-DQA1 C - 3 A vs. G 0.133 (G) 0.108 (G) <1 (-) 46 (-) >0.05
rs2858326 chr6:32659607 HLA-DQB1 [+23447bp] C - 6 A vs. G 0.033 (A) 0.058 (A) >1 (-) 0 (-) >0.05
rs28746923 chr6:32649849 HLA-DQB1 [+13689bp] C - 4 A vs. G 0.133 (G) 0.267 (G) <1 (-) 63 (-) >0.05
rs9274745 chr6:32638058 HLA-DQB1 [+1898bp] C - 4 T vs. C - - <1 (-) 63 (-) >0.05
rs28746924 chr6:32649854 HLA-DQB1 [+13694bp] C - 4 A vs. G 0.133 (A) 0.275 (A) >1 (-) 63 (-) >0.05
rs3104420 chr6:32580028 HLA-DQA1 [-15928bp] C - 4 A vs. G 0.142 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs28746922 chr6:32649844 HLA-DQB1 [+13684bp] C - 4 A vs. G 0.15 (G) 0.275 (G) <1 (-) 63 (-) >0.05
rs9273493 chr6:32628247 HLA-DQB1 C - 5 T vs. C 0.45 (T) 0.425 (T) >1 (-) 34 (-) >0.05
rs17205640 chr6:32637413 HLA-DQB1 [+1253bp] C - 4 A vs. T - - <1 (-) 68 (-) >0.05
rs28746920 chr6:32649813 HLA-DQB1 [+13653bp] C - 4 A vs. G 0.125 (A) 0.317 (A) >1 (-) 64 (-) >0.05
rs9271274 chr6:32580935 HLA-DQA1 [-15021bp] C - 4 A vs. C 0.258 (C) - <1 (-) 8 (-) >0.05

Association studies for this region [+]