HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
Meta_image?name=rs532965

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs17205647 chr6:32637418 HLA-DQB1 [+1258bp] C - 4 A vs. G 0.267 (A) 0.408 (G) <1 (-) 68 (-) >0.05
rs28746989 chr6:32653873 HLA-DQB1 [+17713bp] C - 6 T vs. C 0.167 (T) 0.258 (T) >1 (-) 23 (-) >0.05
rs28891489 chr6:32650362 HLA-DQB1 [+14202bp] C - 4 T vs. C 0.217 (C) 0.383 (C) <1 (-) 65 (-) >0.05
rs28746993 chr6:32654030 HLA-DQB1 [+17870bp] C - 6 C vs. G 0.158 (C) 0.283 (C) >1 (-) 22 (-) >0.05
rs9271277 chr6:32580998 HLA-DQA1 [-14958bp] C - 4 T vs. C 0.258 (C) 0.417 (C) <1 (-) 0 (-) >0.05
rs9469219 chr6:32658211 HLA-DQB1 [+22051bp] C - 9 T vs. C 0.2 (C) 0.467 (C) <1 (-) 42 (-) >0.05
rs9271338 chr6:32582885 HLA-DQA1 [-13071bp] C - 4 T vs. G 0.283 (G) 0.433 (G) <1 (-) 12 (-) >0.05
rs9271339 chr6:32582891 HLA-DQA1 [-13065bp] C - 4 T vs. C 0.283 (C) 0.442 (C) <1 (-) 12 (-) >0.05
rs9271337 chr6:32582881 HLA-DQA1 [-13075bp] C - 4 T vs. C 0.283 (T) 0.408 (T) >1 (-) 12 (-) >0.05
rs9271336 chr6:32582877 HLA-DQA1 [-13079bp] C - 4 A vs. G 0.283 (A) 0.417 (A) >1 (-) 12 (-) >0.05
rs28746942 chr6:32652556 HLA-DQB1 [+16396bp] C - 5 A vs. G - - >1 (-) 47 (-) >0.05
rs9271344 chr6:32583328 HLA-DQA1 [-12628bp] C - 4 T vs. C 0.233 (C) 0.258 (C) >1 (-) 0 (-) >0.05
rs28746941 chr6:32652553 HLA-DQB1 [+16393bp] C - 5 C vs. G - - >1 (-) 47 (-) >0.05
rs28747054 chr6:32655741 HLA-DQB1 [+19581bp] C - 6 T vs. G - - >1 (-) 28 (-) >0.05
rs9275219 chr6:32659077 HLA-DQB1 [+22917bp] C - 8 T vs. C 0.3 (T) 0.292 (T) <1 (-) 56 (-) >0.05
rs9275220 chr6:32659087 HLA-DQB1 [+22927bp] C - 8 T vs. C 0.3 (C) 0.292 (C) >1 (-) 56 (-) >0.05
rs28747033 chr6:32655213 HLA-DQB1 [+19053bp] C - 7 T vs. C 0.158 (C) 0.325 (C) <1 (-) 18 (-) >0.05
rs9271280 chr6:32581047 HLA-DQA1 [-14909bp] C - 4 A vs. T 0.133 (A) 0.367 (A) >1 (-) 0 (-) >0.05
rs9275081 chr6:32648669 HLA-DQB1 [+12509bp] C - 5 T vs. C 0.45 (T) 0.292 (C) <1 (-) 54 (-) >0.05
rs28746983 chr6:32653760 HLA-DQB1 [+17600bp] C - 6 T vs. C 0.158 (T) 0.283 (T) >1 (-) 21 (-) >0.05
rs28746970 chr6:32653259 HLA-DQB1 [+17099bp] C - 6 T vs. C 0.133 (C) 0.3 (C) <1 (-) 20 (-) >0.05
rs9271272 chr6:32580894 HLA-DQA1 [-15062bp] C - 4 T vs. C 0.267 (C) 0.358 (C) <1 (-) 9 (-) >0.05
rs28746959 chr6:32652914 HLA-DQB1 [+16754bp] C - 6 A vs. G 0.183 (A) 0.242 (A) >1 (-) 26 (-) >0.05
rs9271295 chr6:32581467 HLA-DQA1 [-14489bp] C - 4 T vs. C 0.283 (C) 0.392 (C) <1 (-) 8 (-) >0.05
rs28746967 chr6:32653231 HLA-DQB1 [+17071bp] C - 6 T vs. C 0.167 (C) 0.333 (C) <1 (-) 19 (-) >0.05
rs9271283 chr6:32581092 HLA-DQA1 [-14864bp] C - 4 A vs. T 0.283 (A) 0.4 (A) >1 (-) 9 (-) >0.05
rs28746958 chr6:32652913 HLA-DQB1 [+16753bp] C - 6 C vs. G 0.183 (C) 0.242 (C) >1 (-) 27 (-) >0.05
rs28746992 chr6:32653919 HLA-DQB1 [+17759bp] C - 6 A vs. G 0.092 (G) 0.142 (G) <1 (-) 21 (-) >0.05
rs9271284 chr6:32581190 HLA-DQA1 [-14766bp] C - 4 T vs. C 0.283 (C) 0.433 (C) <1 (-) 6 (-) >0.05
rs9271285 chr6:32581193 HLA-DQA1 [-14763bp] C - 4 A vs. G 0.283 (G) 0.433 (G) <1 (-) 6 (-) >0.05
rs28746995 chr6:32654116 HLA-DQB1 [+17956bp] C - 6 A vs. T 0.167 (A) 0.3 (A) >1 (-) 22 (-) >0.05
rs28746960 chr6:32652938 HLA-DQB1 [+16778bp] C - 6 A vs. G 0.15 (G) 0.275 (G) <1 (-) 25 (-) >0.05
rs13217350 chr6:32654272 HLA-DQB1 [+18112bp] C - 8 A vs. C 0.133 (A) - >1 (-) 72 (-) >0.05
rs9271292 chr6:32581350 HLA-DQA1 [-14606bp] C - 4 T vs. C 0.275 (C) 0.408 (C) <1 (-) 6 (-) >0.05
rs9271307 chr6:32581694 HLA-DQA1 [-14262bp] C - 4 A vs. G - - >1 (-) 5 (-) >0.05
rs9271286 chr6:32581221 HLA-DQA1 [-14735bp] C - 4 A vs. G 0.283 (A) 0.425 (A) >1 (-) 6 (-) >0.05
rs9271291 chr6:32581335 HLA-DQA1 [-14621bp] C - 4 A vs. G 0.275 (A) 0.433 (A) >1 (-) 6 (-) >0.05
rs28746910 chr6:32649127 HLA-DQB1 [+12967bp] C - 4 A vs. G 0.167 (G) 0.35 (G) <1 (-) 63 (-) >0.05
rs9271301 chr6:32581614 HLA-DQA1 [-14342bp] C - 4 T vs. C 0.15 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs28746971 chr6:32653272 HLA-DQB1 [+17112bp] C - 6 A vs. G 0.142 (A) 0.3 (A) >1 (-) 20 (-) >0.05
rs28746950 chr6:32652785 HLA-DQB1 [+16625bp] C - 5 A vs. T - - >1 (-) 41 (-) >0.05
rs9271306 chr6:32581658 HLA-DQA1 [-14298bp] C - 4 A vs. G - - <1 (-) 5 (-) >0.05
rs9271279 chr6:32581018 HLA-DQA1 [-14938bp] C - 4 A vs. G - - <1 (-) 11 (-) >0.05
rs9271276 chr6:32580971 HLA-DQA1 [-14985bp] C - 4 A vs. C 0.258 (C) 0.417 (C) <1 (-) 8 (-) >0.05
rs115566240 chr6:32601718 HLA-DQA1 C - 3 T vs. C 0.2 (T) 0.217 (T) <1 (-) 0 (-) >0.05
rs9271459 chr6:32588457 HLA-DQA1 [-7499bp] C - 4 T vs. C 0.325 (C) - >1 (-) 0 (-) >0.05
rs28747021 chr6:32654772 HLA-DQB1 [+18612bp] C - 6 A vs. G 0.167 (G) 0.308 (G) <1 (-) 23 (-) >0.05
rs9271288 chr6:32581260 HLA-DQA1 [-14696bp] C - 4 A vs. G 0.283 (G) 0.392 (G) <1 (-) 8 (-) >0.05
rs9271268 chr6:32580806 HLA-DQA1 [-15150bp] C - 4 A vs. G 0.283 (A) 0.417 (A) >1 (-) 8 (-) >0.05
rs9271287 chr6:32581253 HLA-DQA1 [-14703bp] C - 4 A vs. G 0.283 (G) 0.408 (G) <1 (-) 8 (-) >0.05

Association studies for this region [+]