HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
Meta_image?name=rs532965

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2856682 chr6:32655405 HLA-DQB1 [+19245bp] C - 10 T vs. G 0.075 (T) 0.133 (T) <1 (-) 0 (-) >0.05
rs28746949 chr6:32652774 HLA-DQB1 [+16614bp] C - 6 A vs. G - - >1 (-) 28 (-) >0.05
rs28746944 chr6:32652651 HLA-DQB1 [+16491bp] C - 6 A vs. G 0.133 (A) 0.275 (A) >1 (-) 32 (-) >0.05
rs28746969 chr6:32653248 HLA-DQB1 [+17088bp] C - 6 A vs. G 0.158 (G) 0.292 (G) <1 (-) 21 (-) >0.05
rs28891486 chr6:32649408 HLA-DQB1 [+13248bp] C - 4 A vs. T 0.175 (T) 0.35 (T) <1 (-) 63 (-) >0.05
rs28371252 chr6:32653732 HLA-DQB1 [+17572bp] C - 10 A vs. G 0.075 (A) 0.167 (A) <1 (-) 0 (-) >0.05
rs28746957 chr6:32652893 HLA-DQB1 [+16733bp] C - 6 T vs. C 0.167 (C) 0.258 (C) <1 (-) 27 (-) >0.05
rs28746956 chr6:32652877 HLA-DQB1 [+16717bp] C - 6 T vs. G 0.175 (G) 0.242 (G) <1 (-) 26 (-) >0.05
rs28746961 chr6:32652968 HLA-DQB1 [+16808bp] C - 6 A vs. G - - <1 (-) 23 (-) >0.05
rs28747030 chr6:32655104 HLA-DQB1 [+18944bp] C - 6 A vs. T 0.175 (A) 0.3 (A) >1 (-) 25 (-) >0.05
rs28746962 chr6:32652979 HLA-DQB1 [+16819bp] C - 6 A vs. C 0.167 (A) 0.3 (A) >1 (-) 23 (-) >0.05
rs28747029 chr6:32655096 HLA-DQB1 [+18936bp] C - 6 A vs. G 0.175 (A) 0.292 (A) >1 (-) 25 (-) >0.05
rs35826015 chr6:32590669 HLA-DQA1 [-5287bp] C - 8 A vs. T 0.142 (A) - >1 (-) 67 (-) >0.05
rs9272232 chr6:32602630 HLA-DQA1 C - 6 T vs. C 0.4 (T) 0.458 (T) >1 (-) 48 (-) >0.05
rs28746912 chr6:32649451 HLA-DQB1 [+13291bp] C - 4 A vs. G 0.192 (G) 0.333 (G) <1 (-) 63 (-) >0.05
rs28746946 chr6:32652715 HLA-DQB1 [+16555bp] C - 6 A vs. T 0.175 (A) 0.267 (A) >1 (-) 30 (-) >0.05
rs28746901 chr6:32648681 HLA-DQB1 [+12521bp] C - 4 A vs. T 0.158 (T) 0.333 (T) <1 (-) 62 (-) >0.05
rs28891485 chr6:32649274 HLA-DQB1 [+13114bp] C - 4 T vs. G 0.183 (T) 0.342 (T) >1 (-) 63 (-) >0.05
rs1694112 chr6:32649664 HLA-DQB1 [+13504bp] C - 4 T vs. C 0.183 (C) 0.358 (C) <1 (-) 63 (-) >0.05
rs28746928 chr6:32650060 HLA-DQB1 [+13900bp] C - 4 T vs. G 0.183 (G) 0.233 (G) <1 (-) 64 (-) >0.05
rs17212357 chr6:32652174 HLA-DQB1 [+16014bp] C - 5 T vs. C - - >1 (-) 52 (-) >0.05
rs17212350 chr6:32652173 HLA-DQB1 [+16013bp] C - 5 A vs. G 0.108 (G) 0.3 (G) <1 (-) 52 (-) >0.05
rs17212371 chr6:32652259 HLA-DQB1 [+16099bp] C - 6 A vs. G 0.183 (A) 0.292 (A) >1 (-) 37 (-) >0.05
rs28746952 chr6:32652798 HLA-DQB1 [+16638bp] C - 6 T vs. G - - <1 (-) 27 (-) >0.05
rs28746951 chr6:32652795 HLA-DQB1 [+16635bp] C - 6 A vs. G - - >1 (-) 27 (-) >0.05
rs17212364 chr6:32652176 HLA-DQB1 [+16016bp] C - 5 C vs. G 0.125 (G) 0.333 (G) <1 (-) 52 (-) >0.05
rs28747018 chr6:32654739 HLA-DQB1 [+18579bp] C - 6 T vs. C 0.175 (C) 0.325 (C) <1 (-) 23 (-) >0.05
rs28747006 chr6:32654453 HLA-DQB1 [+18293bp] C - 6 A vs. T 0.183 (T) 0.3 (T) <1 (-) 22 (-) >0.05
rs28747017 chr6:32654723 HLA-DQB1 [+18563bp] C - 6 C vs. G 0.158 (G) 0.325 (G) <1 (-) 24 (-) >0.05
rs28747016 chr6:32654706 HLA-DQB1 [+18546bp] C - 6 A vs. G 0.175 (A) 0.325 (A) >1 (-) 24 (-) >0.05
rs28747015 chr6:32654673 HLA-DQB1 [+18513bp] C - 6 T vs. C 0.175 (T) 0.317 (T) >1 (-) 23 (-) >0.05
rs2856681 chr6:32655524 HLA-DQB1 [+19364bp] C - 10 T vs. C 0.083 (T) 0.175 (T) <1 (-) 0 (-) >0.05
rs28747014 chr6:32654658 HLA-DQB1 [+18498bp] C - 6 T vs. C 0.175 (C) 0.333 (C) <1 (-) 23 (-) >0.05
rs28747013 chr6:32654596 HLA-DQB1 [+18436bp] C - 6 A vs. G 0.175 (A) 0.333 (A) >1 (-) 23 (-) >0.05
rs5002705 chr6:32659319 HLA-DQB1 [+23159bp] C - 8 T vs. C - - >1 (-) 69 (-) >0.05
rs9273467 chr6:32627969 HLA-DQB1 C - 4 T vs. C - - <1 (-) 50 (-) >0.05
rs28747005 chr6:32654401 HLA-DQB1 [+18241bp] C - 6 C vs. G 0.183 (G) 0.225 (G) <1 (-) 24 (-) >0.05
rs28746978 chr6:32653639 HLA-DQB1 [+17479bp] C - 6 A vs. G 0.092 (A) 0.125 (A) >1 (-) 19 (-) >0.05
rs28747004 chr6:32654379 HLA-DQB1 [+18219bp] C - 6 A vs. T 0.175 (A) 0.242 (A) >1 (-) 24 (-) >0.05
rs9272163 chr6:32601146 HLA-DQA1 C - 3 T vs. C - - >1 (-) 0 (-) >0.05
rs28383307 chr6:32586755 HLA-DQA1 [-9201bp] C - 3 T vs. C 0.133 (T) 0.133 (T) <1 (-) 0 (-) >0.05
rs28747046 chr6:32655539 HLA-DQB1 [+19379bp] C - 6 A vs. G 0.167 (G) 0.317 (G) <1 (-) 26 (-) >0.05
rs9273466 chr6:32627967 HLA-DQB1 C - 4 A vs. G - - >1 (-) 50 (-) >0.05
rs28747045 chr6:32655537 HLA-DQB1 [+19377bp] C - 6 T vs. C 0.167 (C) 0.317 (C) <1 (-) 26 (-) >0.05
rs28746900 chr6:32648652 HLA-DQB1 [+12492bp] C - 4 A vs. G 0.183 (G) 0.342 (G) <1 (-) 63 (-) >0.05
rs28746979 chr6:32653648 HLA-DQB1 [+17488bp] C - 6 A vs. C - - >1 (-) 20 (-) >0.05
rs28747028 chr6:32654989 HLA-DQB1 [+18829bp] C - 6 T vs. C 0.167 (T) 0.308 (T) >1 (-) 25 (-) >0.05
rs28747027 chr6:32654977 HLA-DQB1 [+18817bp] C - 6 C vs. G 0.167 (G) 0.3 (G) <1 (-) 25 (-) >0.05
rs28746899 chr6:32648646 HLA-DQB1 [+12486bp] C - 4 A vs. G 0.183 (A) 0.342 (A) >1 (-) 63 (-) >0.05
rs28746916 chr6:32649579 HLA-DQB1 [+13419bp] C - 4 A vs. G 0.192 (A) 0.35 (A) >1 (-) 62 (-) >0.05

Association studies for this region [+]