HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs28746980 chr6:32653651 HLA-DQB1 [+17491bp] C - 6 A vs. G 0.092 (A) 0.167 (A) >1 (-) 21 (-) >0.05
rs28747025 chr6:32654831 HLA-DQB1 [+18671bp] C - 6 C vs. G - - >1 (-) 23 (-) >0.05
rs28747024 chr6:32654830 HLA-DQB1 [+18670bp] C - 6 A vs. G - - >1 (-) 23 (-) >0.05
rs28371261 chr6:32658727 HLA-DQB1 [+22567bp] C - 8 A vs. G 0.075 (A) - <1 (-) 0 (-) >0.05
rs28746906 chr6:32648863 HLA-DQB1 [+12703bp] C - 4 A vs. G 0.15 (A) 0.325 (A) >1 (-) 62 (-) >0.05
rs28746905 chr6:32648842 HLA-DQB1 [+12682bp] C - 4 T vs. C 0.175 (T) 0.333 (T) >1 (-) 63 (-) >0.05
rs28746929 chr6:32650068 HLA-DQB1 [+13908bp] C - 4 A vs. G 0.183 (G) 0.233 (G) <1 (-) 64 (-) >0.05
rs28752515 chr6:32583603 HLA-DQA1 [-12353bp] C - 4 A vs. G 0.375 (G) 0.417 (A) <1 (-) 0 (-) >0.05
rs17206035 chr6:32652224 HLA-DQB1 [+16064bp] C - 6 T vs. C 0.175 (C) 0.308 (C) <1 (-) 38 (-) >0.05
rs28746930 chr6:32650074 HLA-DQB1 [+13914bp] C - 4 A vs. G 0.183 (A) 0.233 (A) >1 (-) 64 (-) >0.05
rs28747044 chr6:32655516 HLA-DQB1 [+19356bp] C - 6 T vs. C 0.15 (C) 0.3 (C) <1 (-) 24 (-) >0.05
rs28746925 chr6:32649932 HLA-DQB1 [+13772bp] C - 4 A vs. G 0.183 (G) 0.25 (G) <1 (-) 63 (-) >0.05
rs3134967 chr6:32659315 HLA-DQB1 [+23155bp] C - 7 A vs. G - - >1 (-) 17 (-) >0.05
rs114289808 chr6:32662613 HLA-DQB1 [+26453bp] C - 11 A vs. T 0.017 (T) 0.067 (T) <1 (-) 0 (-) >0.05
rs2647011 chr6:32661915 HLA-DQB1 [+25755bp] C - 11 A vs. C 0.333 (A) - <1 (-) 0 (-) >0.05
rs1694115 chr6:32652215 HLA-DQB1 [+16055bp] C - 6 A vs. G 0.167 (A) 0.333 (A) >1 (-) 39 (-) >0.05
rs9271489 chr6:32589051 HLA-DQA1 [-6905bp] C - 4 A vs. C 0.192 (A) 0.225 (A) <1 (-) 0 (-) >0.05
rs17533167 chr6:32590844 HLA-DQA1 [-5112bp] C - 8 C vs. G 0.142 (C) - >1 (-) 67 (-) >0.05
rs28752520 chr6:32584739 HLA-DQA1 [-11217bp] C - 4 T vs. C - - >1 (-) 0 (-) >0.05
rs9273325 chr6:32623193 HLA-DQB1 [-4051bp] C - 4 A vs. G 0.092 (A) 0.117 (A) >1 (-) 52 (-) >0.05
rs2858316 chr6:32662501 HLA-DQB1 [+26341bp] C - 12 A vs. T 0.083 (T) - >1 (-) 0 (-) >0.05
rs28747011 chr6:32654554 HLA-DQB1 [+18394bp] C - 6 A vs. G - - <1 (-) 23 (-) >0.05
rs28747010 chr6:32654552 HLA-DQB1 [+18392bp] C - 6 C vs. G - - <1 (-) 23 (-) >0.05
rs17212427 chr6:32652425 HLA-DQB1 [+16265bp] C - 5 T vs. C 0.15 (C) 0.217 (C) <1 (-) 47 (-) >0.05
rs28747043 chr6:32655508 HLA-DQB1 [+19348bp] C - 6 A vs. G 0.158 (G) 0.25 (G) <1 (-) 24 (-) >0.05
rs3129717 chr6:32659308 HLA-DQB1 [+23148bp] C - 7 T vs. C - - >1 (-) 17 (-) >0.05
rs28752523 chr6:32584772 HLA-DQA1 [-11184bp] C - 3 T vs. C - 0.042 (T) <1 (-) 0 (-) >0.05
rs28371255 chr6:32658351 HLA-DQB1 [+22191bp] C - 10 A vs. T 0.075 (T) 0.183 (T) >1 (-) 0 (-) >0.05
rs2647014 chr6:32664279 HLA-DQB1 [+28119bp] C - 12 T vs. C 0.075 (T) 0.175 (T) <1 (-) 0 (-) >0.05
rs2647005 chr6:32664760 HLA-DQB1 [+28600bp] C - 12 A vs. G 0.075 (G) 0.175 (G) >1 (-) 0 (-) >0.05
rs2647017 chr6:32663772 HLA-DQB1 [+27612bp] C - 12 T vs. G 0.075 (G) 0.175 (G) >1 (-) 0 (-) >0.05
rs2856669 chr6:32663360 HLA-DQB1 [+27200bp] C - 12 A vs. G 0.075 (A) 0.175 (A) <1 (-) 0 (-) >0.05
rs2858315 chr6:32662724 HLA-DQB1 [+26564bp] C - 12 A vs. C 0.075 (C) 0.175 (C) >1 (-) 0 (-) >0.05
rs28371256 chr6:32658366 HLA-DQB1 [+22206bp] C - 10 T vs. C 0.075 (C) 0.25 (C) >1 (-) 0 (-) >0.05
rs9272071 chr6:32599487 HLA-DQA1 C - 3 C vs. G 0.383 (C) 0.158 (C) <1 (-) 0 (-) >0.05
rs28747034 chr6:32655257 HLA-DQB1 [+19097bp] C - 8 T vs. C 0.158 (T) 0.292 (T) >1 (-) 11 (-) >0.05
rs2647015 chr6:32664093 HLA-DQB1 [+27933bp] C - 12 T vs. G 0.075 (G) 0.175 (G) >1 (-) 0 (-) >0.05
rs79951097 chr6:32662954 HLA-DQB1 [+26794bp] C - 11 T vs. C 0.008 (C) 0.117 (C) <1 (-) 0 (-) >0.05
rs9272121 chr6:32600556 HLA-DQA1 C - 4 C vs. G - - >1 (-) 0 (-) >0.05
rs28747020 chr6:32654760 HLA-DQB1 [+18600bp] C - 6 T vs. C 0.167 (C) 0.325 (C) <1 (-) 21 (-) >0.05
rs2856675 chr6:32658768 HLA-DQB1 [+22608bp] C - 8 A vs. G 0.05 (A) - <1 (-) 0 (-) >0.05
rs28747019 chr6:32654757 HLA-DQB1 [+18597bp] C - 6 A vs. C 0.175 (A) 0.325 (A) >1 (-) 22 (-) >0.05
rs9271535 chr6:32589959 HLA-DQA1 [-5997bp] C - 4 T vs. C 0.183 (T) 0.2 (T) <1 (-) 0 (-) >0.05
rs9271612 chr6:32591654 HLA-DQA1 [-4302bp] C - 11 A vs. G 0.108 (G) 0.117 (G) <1 (-) 0 (-) >0.05
rs17212343 chr6:32652147 HLA-DQB1 [+15987bp] C - 6 A vs. G 0.167 (G) 0.333 (G) <1 (-) 42 (-) >0.05
rs2858313 chr6:32663919 HLA-DQB1 [+27759bp] C - 12 A vs. G 0.075 (G) 0.183 (G) >1 (-) 0 (-) >0.05
rs28371254 chr6:32657452 HLA-DQB1 [+21292bp] C - 10 T vs. C 0.075 (C) 0.142 (C) >1 (-) 0 (-) >0.05
rs28675927 chr6:32603488 HLA-DQA1 C - 5 A vs. G 0.242 (G) 0.275 (G) >1 (-) 68 (-) >0.05
rs28407322 chr6:32603355 HLA-DQA1 C - 5 T vs. C 0.258 (C) 0.275 (C) >1 (-) 69 (-) >0.05
rs141748883 chr6:32663156 HLA-DQB1 [+26996bp] C - 11 T vs. C - - <1 (-) 0 (-) >0.05

Association studies for this region [+]