HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs28747062 chr6:32656661 HLA-DQB1 [+20501bp] C - 9 T vs. C - - <1 (-) 16 (-) >0.05
rs17205738 chr6:32650762 HLA-DQB1 [+14602bp] C - 4 T vs. G - - <1 (-) 63 (-) >0.05
rs9272043 chr6:32598946 HLA-DQA1 C - 3 T vs. G 0.4 (G) 0.467 (G) >1 (-) 0 (-) >0.05
rs2858323 chr6:32660707 HLA-DQB1 [+24547bp] C - 11 T vs. C 0.075 (T) 0.192 (T) <1 (-) 0 (-) >0.05
rs17599077 chr6:32591058 HLA-DQA1 [-4898bp] C - 8 A vs. C 0.142 (C) 0.025 (C) <1 (-) 67 (-) >0.05
rs77537414 chr6:32664356 HLA-DQB1 [+28196bp] C - 11 C vs. G - 0.133 (C) >1 (-) 0 (-) >0.05
rs2647060 chr6:32569667 HLA-DRB1 [+12042bp] C - 4 T vs. G 0.1 (T) - <1 (-) 0 (-) >0.05
rs10456068 chr6:32659419 HLA-DQB1 [+23259bp] C - 11 T vs. C - - >1 (-) 0 (-) >0.05
rs10456070 chr6:32659527 HLA-DQB1 [+23367bp] C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs10456069 chr6:32659520 HLA-DQB1 [+23360bp] C - 11 T vs. C - - <1 (-) 0 (-) >0.05
rs17205879 chr6:32651576 HLA-DQB1 [+15416bp] C - 4 T vs. C - - <1 (-) 64 (-) >0.05
rs17205921 chr6:32651685 HLA-DQB1 [+15525bp] C - 6 T vs. C 0.175 (T) 0.283 (T) >1 (-) 46 (-) >0.05
rs642093 chr6:32582075 HLA-DQA1 [-13881bp] C - 4 A vs. G 0.117 (A) 0.258 (A) >1 (-) 0 (-) >0.05
rs17205747 chr6:32650911 HLA-DQB1 [+14751bp] C - 6 A vs. T 0.175 (T) 0.325 (T) <1 (-) 45 (-) >0.05
rs9273327 chr6:32623223 HLA-DQB1 [-4021bp] C - 4 A vs. C 0.042 (C) - <1 (-) 53 (-) >0.05
rs17206049 chr6:32652336 HLA-DQB1 [+16176bp] C - 6 A vs. G 0.183 (A) 0.275 (A) >1 (-) 36 (-) >0.05
rs28383259 chr6:32585702 HLA-DQA1 [-10254bp] C - 3 A vs. T 0.108 (T) - <1 (-) 0 (-) >0.05
rs28383258 chr6:32585701 HLA-DQA1 [-10255bp] C - 3 A vs. T 0.117 (T) - <1 (-) 0 (-) >0.05
rs17212258 chr6:32651690 HLA-DQB1 [+15530bp] C - 6 T vs. G 0.158 (T) 0.283 (T) >1 (-) 47 (-) >0.05
rs9272122 chr6:32600562 HLA-DQA1 C - 4 T vs. C 0.483 (T) 0.333 (T) <1 (-) 44 (-) >0.05
rs2856673 chr6:32659822 HLA-DQB1 [+23662bp] C - 11 T vs. G 0.075 (T) 0.175 (T) <1 (-) 0 (-) >0.05
rs17205754 chr6:32650930 HLA-DQB1 [+14770bp] C - 6 A vs. C - - <1 (-) 45 (-) >0.05
rs17205768 chr6:32650937 HLA-DQB1 [+14777bp] C - 6 T vs. C - - <1 (-) 45 (-) >0.05
rs17212076 chr6:32650724 HLA-DQB1 [+14564bp] C - 6 A vs. G 0.175 (G) 0.317 (G) <1 (-) 44 (-) >0.05
rs2856724 chr6:32585161 HLA-DQA1 [-10795bp] C - 4 A vs. G - - <1 (-) 0 (-) >0.05
rs112117693 chr6:32662754 HLA-DQB1 [+26594bp] C - 11 T vs. C 0.017 (T) 0.117 (T) >1 (-) 0 (-) >0.05
rs17205809 chr6:32651135 HLA-DQB1 [+14975bp] C - 8 A vs. G 0.183 (A) 0.275 (A) <1 (-) 44 (-) >0.05
rs17205761 chr6:32650934 HLA-DQB1 [+14774bp] C - 6 A vs. G - - >1 (-) 46 (-) >0.05
rs17205717 chr6:32650746 HLA-DQB1 [+14586bp] C - 6 T vs. C - - <1 (-) 44 (-) >0.05
rs28747032 chr6:32655180 HLA-DQB1 [+19020bp] C - 9 T vs. C 0.175 (C) 0.325 (C) <1 (-) 4 (-) >0.05
rs28746939 chr6:32651416 HLA-DQB1 [+15256bp] C - 6 T vs. C 0.15 (C) 0.292 (C) <1 (-) 48 (-) >0.05
rs28747050 chr6:32655674 HLA-DQB1 [+19514bp] C - 9 T vs. C 0.158 (C) 0.233 (C) <1 (-) 8 (-) >0.05
rs3134974 chr6:32652865 HLA-DQB1 [+16705bp] C - 6 T vs. C 0.258 (C) 0.242 (G) >1 (-) 51 (-) >0.05
rs17212062 chr6:32650648 HLA-DQB1 [+14488bp] C - 6 A vs. G 0.183 (G) 0.317 (G) <1 (-) 43 (-) >0.05
rs17212069 chr6:32650667 HLA-DQB1 [+14507bp] C - 6 C vs. G 0.183 (G) 0.308 (G) <1 (-) 43 (-) >0.05
rs28747038 chr6:32655368 HLA-DQB1 [+19208bp] C - 9 A vs. C 0.167 (A) 0.308 (A) >1 (-) 6 (-) >0.05
rs9271405 chr6:32587584 HLA-DQA1 [-8372bp] C - 4 T vs. C 0.117 (C) 0.217 (C) >1 (-) 0 (-) >0.05
rs9271325 chr6:32582513 HLA-DQA1 [-13443bp] C - 4 C vs. G 0.35 (G) 0.408 (G) <1 (-) 10 (-) >0.05
rs28747049 chr6:32655659 HLA-DQB1 [+19499bp] C - 9 A vs. C 0.158 (C) 0.25 (C) <1 (-) 8 (-) >0.05
rs28747051 chr6:32655686 HLA-DQB1 [+19526bp] C - 9 T vs. G 0.158 (T) - >1 (-) 8 (-) >0.05
rs28747052 chr6:32655703 HLA-DQB1 [+19543bp] C - 9 T vs. C 0.158 (T) 0.258 (T) >1 (-) 8 (-) >0.05
rs17212251 chr6:32651629 HLA-DQB1 [+15469bp] C - 6 C vs. G 0.167 (C) 0.325 (C) >1 (-) 47 (-) >0.05
rs13208475 chr6:32583255 HLA-DQA1 [-12701bp] C - 4 T vs. C 0.167 (T) 0.142 (T) >1 (-) 0 (-) >0.05
rs13208697 chr6:32583274 HLA-DQA1 [-12682bp] C - 4 T vs. G 0.158 (T) 0.133 (T) >1 (-) 0 (-) >0.05
rs9274698 chr6:32637095 HLA-DQB1 [+935bp] C - 4 A vs. C - - >1 (-) 69 (-) >0.05
rs9272070 chr6:32599485 HLA-DQA1 C - 3 T vs. G 0.408 (G) 0.45 (G) >1 (-) 0 (-) >0.05
rs17212090 chr6:32650809 HLA-DQB1 [+14649bp] C - 6 T vs. C 0.183 (T) 0.325 (T) >1 (-) 43 (-) >0.05
rs9271407 chr6:32587605 HLA-DQA1 [-8351bp] C - 4 T vs. C 0.125 (T) 0.217 (T) <1 (-) 0 (-) >0.05
rs9271410 chr6:32587645 HLA-DQA1 [-8311bp] C - 4 A vs. G 0.133 (G) 0.217 (G) >1 (-) 0 (-) >0.05
rs9271412 chr6:32587685 HLA-DQA1 [-8271bp] C - 4 T vs. C 0.133 (T) 0.217 (T) <1 (-) 0 (-) >0.05

Association studies for this region [+]