HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs2647066 chr6:32571122 HLA-DRB1 [+13497bp] C - 7 T vs. C 0.258 (T) 0.208 (T) <1 (-) 33 (-) <1.00e-04
rs9271719 chr6:32593479 HLA-DQA1 [-2477bp] All: C 44,247 3 C vs. T 0.225 (C) 0.242 (C) 1.18 (1.09-1.28) 65 (0-90) 2.86e-05
rs9271695 chr6:32593080 HLA-DQA1 [-2876bp] All: C 44,247 3 A vs. G 0.233 (A) 0.233 (A) 1.17 (1.09-1.27) 62 (0-89) 3.39e-05
rs9271710 chr6:32593421 HLA-DQA1 [-2535bp] All: C 44,247 3 G vs. A 0.25 (G) 0.267 (G) 1.19 (1.10-1.29) 24 (0-92) 3.50e-05
rs35484705 chr6:32583051 HLA-DQA1 [-12905bp] All: C 45,262 5 C vs. T 0.483 (C) 0.342 (T) 1.20 (1.10-1.30) 12 (0-82) 3.58e-05
rs34599306 chr6:32583557 HLA-DQA1 [-12399bp] C - 4 C vs. G 0.475 (C) 0.417 (G) >1 (-) 0 (-) <1.00e-04
rs9271640 chr6:32592200 HLA-DQA1 [-3756bp] All: C 44,247 3 T vs. C 0.225 (T) 0.275 (T) 1.16 (1.08-1.24) 65 (0-90) 3.74e-05
rs9271639 chr6:32592143 HLA-DQA1 [-3813bp] All: C 44,247 3 A vs. G 0.258 (A) 0.3 (A) 1.16 (1.08-1.24) 64 (0-90) 3.97e-05
rs3129752 chr6:32582627 HLA-DQA1 [-13329bp] C - 4 C vs. G 0.475 (G) 0.433 (C) <1 (-) 0 (-) <1.00e-04
rs9271641 chr6:32592209 HLA-DQA1 [-3747bp] All: C 44,247 3 A vs. G 0.233 (A) 0.267 (A) 1.16 (1.08-1.24) 65 (0-90) 4.19e-05
rs9271634 chr6:32592112 HLA-DQA1 [-3844bp] All: C 44,247 3 A vs. G 0.275 (A) - 1.16 (1.08-1.24) 64 (0-90) 4.23e-05
rs9275194 chr6:32656334 HLA-DQB1 [+20174bp] All: C 93,567 12 C vs. T 0.317 (C) 0.442 (T) 0.90 (0.85-0.95) 0 (0-33) 4.41e-05
rs9271601 chr6:32591337 HLA-DQA1 [-4619bp] C - 6 A vs. T 0.45 (T) 0.483 (T) >1 (-) 0 (-) <1.00e-04
rs3129754 chr6:32583046 HLA-DQA1 [-12910bp] All: C 45,262 5 A vs. G 0.483 (A) 0.325 (G) 1.19 (1.09-1.29) 23 (0-69) 5.64e-05
rs28383233 chr6:32584153 HLA-DQA1 [-11803bp] C - 4 A vs. G 0.342 (G) 0.442 (A) <1 (-) 0 (-) <1.00e-04
rs9271650 chr6:32592383 HLA-DQA1 [-3573bp] All: C 44,247 3 T vs. C 0.267 (T) - 1.16 (1.08-1.25) 16 (0-91) 6.51e-05
rs28383221 chr6:32583212 HLA-DQA1 [-12744bp] C - 4 A vs. G 0.375 (A) 0.45 (G) >1 (-) 0 (-) <1.00e-04
rs9271763 chr6:32594061 HLA-DQA1 [-1895bp] All: C 44,247 3 A vs. G 0.433 (A) 0.475 (A) 1.16 (1.08-1.25) 27 (0-92) 7.46e-05
rs4587163 chr6:32593167 HLA-DQA1 [-2789bp] All: C 44,247 3 T vs. C 0.383 (T) 0.492 (T) 0.86 (0.80-0.93) 27 (0-92) 7.47e-05
rs9275171 chr6:32653972 HLA-DQB1 [+17812bp] All: C 93,567 12 G vs. A 0.292 (G) 0.483 (G) 0.91 (0.86-0.95) 0 (0-42) 7.53e-05
rs9275167 chr6:32653263 HLA-DQB1 [+17103bp] C - 10 A vs. G 0.208 (G) 0.075 (G) >1 (-) 7 (-) <1.00e-04
rs3104369 chr6:32602482 HLA-DQA1 All: C 45,262 5 T vs. C 0.292 (T) 0.25 (T) 1.15 (1.07-1.23) 34 (0-75) 7.81e-05
rs9275175 chr6:32654147 HLA-DQB1 [+17987bp] All: C 93,567 12 A vs. G 0.292 (A) 0.5 (A) 0.91 (0.86-0.95) 0 (0-42) 8.03e-05
rs9275176 chr6:32654157 HLA-DQB1 [+17997bp] All: C 93,567 12 G vs. A 0.283 (G) 0.5 (G) 0.91 (0.86-0.95) 0 (0-43) 8.04e-05
rs17425622 chr6:32571961 HLA-DRB1 [+14336bp] All: C 8,889 3 C vs. T 0.217 (C) 0.158 (C) 0.79 (0.71-0.89) 0 (0-85) 8.07e-05
rs28752514 chr6:32583576 HLA-DQA1 [-12380bp] C - 4 T vs. C 0.367 (T) 0.408 (C) >1 (-) 0 (-) <1.00e-04
rs614348 chr6:32573877 HLA-DRB1 [+16252bp] All: C 74,051 4 C vs. T 0.458 (C) 0.183 (C) 0.90 (0.86-0.95) 0 (0-68) 8.83e-05
rs3129760 chr6:32585409 HLA-DQA1 [-10547bp] All: C 84,927 7 A vs. G - - 0.82 (0.75-0.91) 46 (0-77) 9.04e-05
rs9271721 chr6:32593519 HLA-DQA1 [-2437bp] All: C 44,247 3 G vs. A 0.225 (G) 0.258 (G) 1.17 (1.08-1.27) 47 (0-84) 9.37e-05
rs9271548 chr6:32590234 HLA-DQA1 [-5722bp] C - 9 A vs. T 0.425 (A) 0.392 (A) >1 (-) 0 (-) <1.00e-04
rs9275187 chr6:32656038 HLA-DQB1 [+19878bp] All: C 93,567 12 C vs. T 0.308 (C) - 0.91 (0.87-0.96) 0 (0-26) 9.52e-05
rs3129751 chr6:32582189 HLA-DQA1 [-13767bp] All: C 42,293 4 C vs. A 0.267 (C) 0.05 (C) 0.82 (0.74-0.91) 0 (0-83) 9.74e-05
rs9275192 chr6:32656305 HLA-DQB1 [+20145bp] All: C 93,567 12 G vs. A - - 1.12 (1.06-1.18) 0 (0-32) 1.08e-04
rs9275193 chr6:32656306 HLA-DQB1 [+20146bp] All: C 93,567 12 C vs. A - - 1.12 (1.06-1.18) 0 (0-32) 1.08e-04
rs3129755 chr6:32583057 HLA-DQA1 [-12899bp] C - 4 A vs. G 0.425 (A) 0.317 (G) >1 (-) 0 (-) <0.05
rs1966002 chr6:32581684 HLA-DQA1 [-14272bp] All: C 45,262 5 T vs. G - - 1.14 (1.07-1.22) 53 (0-83) 1.23e-04
rs9275188 chr6:32656136 HLA-DQB1 [+19976bp] All: C 93,567 12 T vs. C 0.35 (T) 0.392 (C) 0.91 (0.86-0.95) 0 (0-42) 1.23e-04
rs9271180 chr6:32578209 HLA-DQA1 [-17747bp] All: C 84,927 7 C vs. T 0.367 (C) 0.2 (C) 1.11 (1.05-1.17) 0 (0-60) 1.29e-04
rs3104415 chr6:32582577 HLA-DQA1 [-13379bp] All: C 45,262 5 C vs. A 0.408 (C) 0.292 (C) 0.87 (0.81-0.93) 8 (0-81) 1.34e-04
rs35940802 chr6:32584355 HLA-DQA1 [-11601bp] All: C 11,858 4 A vs. G 0.5 (A) 0.158 (G) 1.23 (1.11-1.37) 0 (0-61) 1.36e-04
rs9271593 chr6:32591198 HLA-DQA1 [-4758bp] All: C 93,766 12 C vs. T 0.358 (C) 0.35 (C) 1.09 (1.04-1.14) 43 (0-71) 1.39e-04
rs4959103 chr6:32583125 HLA-DQA1 [-12831bp] All: C 45,262 5 T vs. C 0.475 (T) 0.483 (C) 1.14 (1.07-1.23) 25 (0-70) 1.41e-04
rs4959104 chr6:32583129 HLA-DQA1 [-12827bp] All: C 45,262 5 T vs. C 0.475 (T) 0.475 (C) 1.14 (1.07-1.23) 25 (0-70) 1.41e-04
rs34028938 chr6:32584346 HLA-DQA1 [-11610bp] All: C 11,858 4 A vs. C 0.492 (A) 0.167 (A) 0.81 (0.73-0.91) 0 (0-60) 1.42e-04
rs646984 chr6:32576592 HLA-DRB1 [+18967bp] All: C 73,373 4 C vs. A 0.408 (C) 0.3 (C) 0.90 (0.85-0.95) 18 (0-87) 1.47e-04
rs9275184 chr6:32654714 HLA-DQB1 [+18554bp] C - 10 T vs. C 0.175 (C) 0.058 (C) >1 (-) 17 (-) <0.05
rs34136174 chr6:32583682 HLA-DQA1 [-12274bp] All: C 45,262 5 A vs. C 0.483 (A) 0.425 (C) 1.14 (1.07-1.22) 25 (0-70) 1.55e-04
rs36124427 chr6:32583677 HLA-DQA1 [-12279bp] All: C 45,262 5 T vs. C 0.483 (T) 0.458 (C) 1.14 (1.07-1.22) 25 (0-70) 1.55e-04
rs482162 chr6:32576019 HLA-DRB1 [+18394bp] All: C 70,102 3 C vs. T 0.475 (C) 0.2 (C) 0.91 (0.87-0.96) 0 (0-70) 1.57e-04
rs28383186 chr6:32572048 HLA-DRB1 [+14423bp] All: C 8,889 3 T vs. G 0.367 (T) 0.183 (T) 0.79 (0.70-0.90) 9 (0-91) 1.60e-04

Association studies for this region [+]