HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
Meta_image?name=rs532965

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs17205802 chr6:32651072 HLA-DQB1 [+14912bp] C - 6 T vs. G 0.142 (G) 0.233 (G) <1 (-) 44 (-) >0.05
rs17205872 chr6:32651558 HLA-DQB1 [+15398bp] C - 7 A vs. G 0.158 (A) 0.325 (A) >1 (-) 40 (-) >0.05
rs4538748 chr6:32657505 HLA-DQB1 [+21345bp] C - 10 T vs. C 0.267 (C) 0.367 (T) <1 (-) 58 (-) >0.05
rs9405119 chr6:32657681 HLA-DQB1 [+21521bp] C - 9 A vs. G 0.183 (G) 0.342 (G) <1 (-) 18 (-) >0.05
rs28383263 chr6:32585843 HLA-DQA1 [-10113bp] C - 4 T vs. C 0.133 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs9271379 chr6:32587333 HLA-DQA1 [-8623bp] C - 4 T vs. C - 0.233 (T) <1 (-) 0 (-) >0.05
rs607998 chr6:32587038 HLA-DQA1 [-8918bp] C - 4 A vs. G 0.117 (A) 0.092 (A) >1 (-) 0 (-) >0.05
rs17212286 chr6:32651819 HLA-DQB1 [+15659bp] C - 6 A vs. G 0.158 (A) 0.325 (A) >1 (-) 47 (-) >0.05
rs17205949 chr6:32651816 HLA-DQB1 [+15656bp] C - 6 A vs. C 0.142 (A) 0.325 (A) >1 (-) 47 (-) >0.05
rs9378274 chr6:32656983 HLA-DQB1 [+20823bp] C - 9 A vs. T 0.15 (A) 0.233 (A) >1 (-) 18 (-) >0.05
rs9391891 chr6:32656975 HLA-DQB1 [+20815bp] C - 9 A vs. C 0.125 (A) 0.217 (A) >1 (-) 18 (-) >0.05
rs28772272 chr6:32656980 HLA-DQB1 [+20820bp] C - 9 T vs. C 0.142 (T) 0.242 (T) >1 (-) 18 (-) >0.05
rs17205942 chr6:32651798 HLA-DQB1 [+15638bp] C - 6 T vs. C 0.2 (T) 0.308 (T) >1 (-) 46 (-) >0.05
rs9405042 chr6:32657020 HLA-DQB1 [+20860bp] C - 9 C vs. G 0.175 (G) 0.325 (G) <1 (-) 19 (-) >0.05
rs9272185 chr6:32601620 HLA-DQA1 C - 3 A vs. G 0.333 (A) 0.45 (A) >1 (-) 38 (-) >0.05
rs9272254 chr6:32603098 HLA-DQA1 C - 3 T vs. C 0.408 (T) 0.433 (T) <1 (-) 55 (-) >0.05
rs28383265 chr6:32585924 HLA-DQA1 [-10032bp] C - 3 T vs. C 0.125 (T) 0.025 (T) >1 (-) 0 (-) >0.05
rs9272183 chr6:32601604 HLA-DQA1 C - 3 T vs. C 0.342 (T) 0.442 (T) >1 (-) 37 (-) >0.05
rs9272172 chr6:32601260 HLA-DQA1 C - 3 C vs. G 0.258 (C) 0.208 (C) >1 (-) 27 (-) >0.05
rs28383271 chr6:32586134 HLA-DQA1 [-9822bp] C - 4 T vs. C 0.125 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs17205851 chr6:32651265 HLA-DQB1 [+15105bp] C - 7 T vs. C 0.183 (C) 0.342 (C) <1 (-) 39 (-) >0.05
rs17205844 chr6:32651254 HLA-DQB1 [+15094bp] C - 7 C vs. G 0.183 (G) 0.342 (G) <1 (-) 40 (-) >0.05
rs28747064 chr6:32656770 HLA-DQB1 [+20610bp] C - 9 A vs. G - - <1 (-) 17 (-) >0.05
rs9272170 chr6:32601243 HLA-DQA1 C - 3 C vs. G 0.283 (G) 0.375 (G) <1 (-) 32 (-) >0.05
rs28383257 chr6:32585680 HLA-DQA1 [-10276bp] C - 4 T vs. C 0.083 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs9272118 chr6:32600448 HLA-DQA1 C - 5 T vs. C 0.408 (T) 0.475 (T) >1 (-) 0 (-) >0.05
rs9272132 chr6:32600677 HLA-DQA1 C - 5 A vs. G 0.408 (G) 0.458 (G) <1 (-) 0 (-) >0.05
rs9272116 chr6:32600404 HLA-DQA1 C - 5 T vs. C 0.375 (C) 0.475 (C) <1 (-) 0 (-) >0.05
rs9272154 chr6:32601019 HLA-DQA1 C - 4 A vs. G 0.275 (A) 0.233 (A) <1 (-) 36 (-) >0.05
rs28383264 chr6:32585901 HLA-DQA1 [-10055bp] C - 3 T vs. C 0.133 (T) - >1 (-) 0 (-) >0.05
rs2395535 chr6:32657351 HLA-DQB1 [+21191bp] C - 9 A vs. C 0.15 (C) 0.483 (C) <1 (-) 18 (-) >0.05
rs2858870 chr6:32572251 HLA-DRB1 [+14626bp] C - 4 T vs. C 0.108 (C) - >1 (-) 0 (-) >0.05
rs9272212 chr6:32602033 HLA-DQA1 C - 3 A vs. G - - >1 (-) 23 (-) >0.05
rs28383267 chr6:32585978 HLA-DQA1 [-9978bp] C - 3 A vs. G 0.125 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs28383269 chr6:32585995 HLA-DQA1 [-9961bp] C - 3 T vs. C 0.125 (C) - <1 (-) 0 (-) >0.05
rs4570006 chr6:32657257 HLA-DQB1 [+21097bp] C - 9 T vs. G 0.167 (T) 0.317 (T) >1 (-) 18 (-) >0.05
rs28383306 chr6:32586739 HLA-DQA1 [-9217bp] C - 3 A vs. T 0.1 (T) - <1 (-) 0 (-) >0.05
rs9271527 chr6:32589867 HLA-DQA1 [-6089bp] C - 10 T vs. C 0.192 (T) 0.225 (T) <1 (-) 0 (-) >0.05
rs9272182 chr6:32601564 HLA-DQA1 C - 3 A vs. G 0.333 (A) 0.442 (A) >1 (-) 34 (-) >0.05
rs9296035 chr6:32657888 HLA-DQB1 [+21728bp] C - 9 A vs. G 0.183 (G) 0.333 (G) <1 (-) 19 (-) >0.05
rs9272114 chr6:32600317 HLA-DQA1 C - 5 T vs. C 0.4 (C) 0.475 (C) <1 (-) 0 (-) >0.05
rs17205823 chr6:32651168 HLA-DQB1 [+15008bp] C - 7 T vs. G 0.158 (T) 0.342 (T) >1 (-) 41 (-) >0.05
rs28383303 chr6:32586648 HLA-DQA1 [-9308bp] C - 3 A vs. G 0.117 (G) - <1 (-) 0 (-) >0.05
rs9271558 chr6:32590348 HLA-DQA1 [-5608bp] C - 10 A vs. G 0.192 (G) 0.225 (G) >1 (-) 0 (-) >0.05
rs28383302 chr6:32586639 HLA-DQA1 [-9317bp] C - 3 A vs. G 0.117 (G) - <1 (-) 0 (-) >0.05
rs17205858 chr6:32651297 HLA-DQB1 [+15137bp] C - 7 T vs. C 0.183 (C) 0.342 (C) <1 (-) 40 (-) >0.05
rs2187668 chr6:32605884 HLA-DQA1 C - 7 T vs. C 0.1 (T) 0.058 (T) <1 (-) 22 (-) >0.05
rs679243 chr6:32570959 HLA-DRB1 [+13334bp] C - 3 T vs. C 0.2 (T) 0.425 (C) >1 (-) 0 (-) >0.05
rs9394110 chr6:32658471 HLA-DQB1 [+22311bp] C - 9 A vs. G 0.183 (G) 0.3 (G) <1 (-) 19 (-) >0.05
rs4538747 chr6:32657334 HLA-DQB1 [+21174bp] C - 8 A vs. T 0.15 (A) 0.325 (A) >1 (-) 28 (-) >0.05

Association studies for this region [+]