HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
Meta_image?name=rs532965

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9272158 chr6:32601122 HLA-DQA1 C - 4 A vs. G - - <1 (-) 26 (-) >0.05
rs10947320 chr6:32581491 HLA-DQA1 [-14465bp] C - 4 T vs. C 0.108 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs17211580 chr6:32602754 HLA-DQA1 C - 5 A vs. G 0.25 (A) 0.25 (A) <1 (-) 70 (-) >0.05
rs9272165 chr6:32601170 HLA-DQA1 C - 5 C vs. G - - <1 (-) 13 (-) >0.05
rs3104367 chr6:32603487 HLA-DQA1 C - 4 T vs. C 0.467 (T) 0.45 (T) >1 (-) 0 (-) >0.05
rs28752519 chr6:32584705 HLA-DQA1 [-11251bp] C - 4 T vs. C 0.117 (C) - <1 (-) 0 (-) >0.05
rs28383244 chr6:32584462 HLA-DQA1 [-11494bp] C - 4 A vs. G 0.108 (A) - >1 (-) 0 (-) >0.05
rs28383250 chr6:32585525 HLA-DQA1 [-10431bp] C - 4 A vs. T 0.133 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs17211601 chr6:32602817 HLA-DQA1 C - 5 T vs. G 0.258 (G) 0.258 (G) >1 (-) 70 (-) >0.05
rs28383251 chr6:32585567 HLA-DQA1 [-10389bp] C - 4 T vs. C 0.125 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs5004278 chr6:32582401 HLA-DQA1 [-13555bp] C - 4 C vs. G 0.275 (C) 0.467 (G) >1 (-) 0 (-) >0.05
rs28383256 chr6:32585675 HLA-DQA1 [-10281bp] C - 4 C vs. G 0.108 (C) - >1 (-) 0 (-) >0.05
rs28383255 chr6:32585641 HLA-DQA1 [-10315bp] C - 4 A vs. G 0.117 (A) - >1 (-) 0 (-) >0.05
rs35900428 chr6:32591755 HLA-DQA1 [-4201bp] C - 8 A vs. G 0.142 (A) - >1 (-) 68 (-) >0.05
rs28383254 chr6:32585638 HLA-DQA1 [-10318bp] C - 4 A vs. C 0.117 (C) - <1 (-) 0 (-) >0.05
rs5004279 chr6:32582406 HLA-DQA1 [-13550bp] C - 4 C vs. G 0.283 (C) 0.467 (G) >1 (-) 0 (-) >0.05
rs28383245 chr6:32584479 HLA-DQA1 [-11477bp] C - 4 T vs. C 0.1 (C) - <1 (-) 0 (-) >0.05
rs28752535 chr6:32585104 HLA-DQA1 [-10852bp] C - 4 C vs. G 0.133 (G) - <1 (-) 0 (-) >0.05
rs28383246 chr6:32584482 HLA-DQA1 [-11474bp] C - 4 A vs. G 0.117 (A) - >1 (-) 0 (-) >0.05
rs28383247 chr6:32584525 HLA-DQA1 [-11431bp] C - 4 A vs. G 0.125 (A) - >1 (-) 0 (-) >0.05
rs28383248 chr6:32585489 HLA-DQA1 [-10467bp] C - 4 A vs. G 0.125 (A) - >1 (-) 0 (-) >0.05
rs28383262 chr6:32585773 HLA-DQA1 [-10183bp] C - 4 A vs. T 0.133 (T) 0.033 (T) <1 (-) 0 (-) >0.05
rs28383228 chr6:32583993 HLA-DQA1 [-11963bp] C - 4 A vs. T 0.133 (A) 0.025 (A) >1 (-) 0 (-) >0.05
rs28383252 chr6:32585574 HLA-DQA1 [-10382bp] C - 4 T vs. C 0.117 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs28383227 chr6:32583982 HLA-DQA1 [-11974bp] C - 4 A vs. G 0.133 (A) 0.017 (A) >1 (-) 0 (-) >0.05
rs28383261 chr6:32585741 HLA-DQA1 [-10215bp] C - 4 T vs. C 0.108 (C) - <1 (-) 0 (-) >0.05
rs28383232 chr6:32584108 HLA-DQA1 [-11848bp] C - 4 T vs. C 0.117 (T) - >1 (-) 0 (-) >0.05
rs28752518 chr6:32584588 HLA-DQA1 [-11368bp] C - 4 A vs. G 0.125 (G) - <1 (-) 0 (-) >0.05
rs28752517 chr6:32584583 HLA-DQA1 [-11373bp] C - 4 A vs. T 0.125 (A) - >1 (-) 0 (-) >0.05
rs28383253 chr6:32585589 HLA-DQA1 [-10367bp] C - 4 T vs. C 0.1 (T) 0.033 (T) >1 (-) 0 (-) >0.05
rs28383225 chr6:32583824 HLA-DQA1 [-12132bp] C - 4 T vs. C 0.133 (C) - <1 (-) 0 (-) >0.05
rs9271278 chr6:32581016 HLA-DQA1 [-14940bp] C - 4 A vs. G - - <1 (-) 0 (-) >0.05
rs28752524 chr6:32584862 HLA-DQA1 [-11094bp] C - 4 A vs. G 0.117 (A) - >1 (-) 0 (-) >0.05
rs28752525 chr6:32584868 HLA-DQA1 [-11088bp] C - 4 C vs. G 0.117 (C) - >1 (-) 0 (-) >0.05
rs75786451 chr6:32664646 HLA-DQB1 [+28486bp] C - 8 T vs. C - 0.042 (C) >1 (-) 20 (-) >0.05
rs9271328 chr6:32582548 HLA-DQA1 [-13408bp] C - 4 A vs. G 0.308 (G) 0.475 (A) <1 (-) 0 (-) >0.05
rs28752513 chr6:32583459 HLA-DQA1 [-12497bp] C - 4 A vs. C 0.133 (C) - <1 (-) 0 (-) >0.05
rs28383229 chr6:32584024 HLA-DQA1 [-11932bp] C - 4 A vs. G 0.117 (G) 0.008 (G) <1 (-) 0 (-) >0.05
rs9272142 chr6:32600800 HLA-DQA1 C - 5 C vs. G - - >1 (-) 0 (-) >0.05
rs13204933 chr6:32583026 HLA-DQA1 [-12930bp] C - 4 A vs. G 0.133 (G) - <1 (-) 0 (-) >0.05
rs62404159 chr6:32661150 HLA-DQB1 [+24990bp] C - 3 A vs. G 0.075 (G) - >1 (-) 19 (-) >0.05
rs9272218 chr6:32602238 HLA-DQA1 C - 4 T vs. C 0.408 (T) 0.433 (T) >1 (-) 29 (-) >0.05
rs3129716 chr6:32657436 HLA-DQB1 [+21276bp] C - 3 T vs. C 0.1 (C) - >1 (-) 54 (-) >0.05
rs13204672 chr6:32582796 HLA-DQA1 [-13160bp] C - 4 A vs. G 0.133 (G) 0.033 (G) <1 (-) 0 (-) >0.05
rs9272141 chr6:32600797 HLA-DQA1 C - 5 A vs. C - - <1 (-) 18 (-) >0.05
rs17212160 chr6:32651097 HLA-DQB1 [+14937bp] C - 7 T vs. G 0.142 (G) 0.308 (G) <1 (-) 36 (-) >0.05
rs3129713 chr6:32657255 HLA-DQB1 [+21095bp] C - 10 T vs. C 0.075 (T) 0.283 (T) >1 (-) 5 (-) >0.05
rs17205114 chr6:32602196 HLA-DQA1 C - 5 T vs. G 0.25 (G) 0.267 (G) >1 (-) 70 (-) >0.05
rs34145408 chr6:32602124 HLA-DQA1 C - 5 T vs. C 0.25 (T) 0.258 (T) <1 (-) 70 (-) >0.05
rs7775228 chr6:32658079 HLA-DQB1 [+21919bp] C - 10 T vs. C 0.092 (C) 0.308 (C) <1 (-) 4 (-) >0.05

Association studies for this region [+]