HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs112643393 chr6:32662826 HLA-DQB1 [+26666bp] C - 7 T vs. C - - <1 (-) 28 (-) >0.05
rs2858327 chr6:32658935 HLA-DQB1 [+22775bp] C - 10 A vs. G 0.075 (G) 0.2 (G) <1 (-) 5 (-) >0.05
rs9272064 chr6:32599338 HLA-DQA1 C - 4 T vs. C 0.392 (T) 0.367 (T) >1 (-) 0 (-) >0.05
rs9272214 chr6:32602096 HLA-DQA1 C - 3 A vs. G 0.408 (A) 0.45 (A) <1 (-) 56 (-) >0.05
rs28383300 chr6:32586611 HLA-DQA1 [-9345bp] C - 3 T vs. C 0.083 (T) - <1 (-) 0 (-) >0.05
rs9271522 chr6:32589791 HLA-DQA1 [-6165bp] C - 10 T vs. C 0.2 (C) 0.217 (C) >1 (-) 0 (-) >0.05
rs28383301 chr6:32586631 HLA-DQA1 [-9325bp] C - 3 T vs. C 0.117 (T) - <1 (-) 0 (-) >0.05
rs9272174 chr6:32601307 HLA-DQA1 C - 3 T vs. C 0.3 (T) 0.367 (T) <1 (-) 55 (-) >0.05
rs9272108 chr6:32600228 HLA-DQA1 C - 5 T vs. C 0.342 (C) 0.375 (C) >1 (-) 14 (-) >0.05
rs28891492 chr6:32662451 HLA-DQB1 [+26291bp] C - 12 T vs. C - - >1 (-) 0 (-) >0.05
rs28383249 chr6:32585500 HLA-DQA1 [-10456bp] C - 4 T vs. C 0.108 (T) - <1 (-) 0 (-) >0.05
rs9272120 chr6:32600501 HLA-DQA1 C - 5 A vs. G 0.383 (G) 0.375 (G) <1 (-) 16 (-) >0.05
rs28383315 chr6:32587281 HLA-DQA1 [-8675bp] C - 3 A vs. G - - >1 (-) 0 (-) >0.05
rs9272119 chr6:32600470 HLA-DQA1 C - 5 T vs. C 0.342 (C) 0.383 (C) <1 (-) 16 (-) >0.05
rs9272059 chr6:32599223 HLA-DQA1 C - 4 T vs. C 0.367 (C) 0.367 (C) <1 (-) 0 (-) >0.05
rs9272130 chr6:32600638 HLA-DQA1 C - 5 A vs. G 0.375 (G) 0.35 (G) <1 (-) 16 (-) >0.05
rs2858303 chr6:32650550 HLA-DQB1 [+14390bp] C - 4 T vs. C 0.075 (C) 0.175 (C) >1 (-) 0 (-) >0.05
rs9272103 chr6:32599896 HLA-DQA1 C - 5 T vs. C 0.392 (T) 0.392 (T) <1 (-) 13 (-) >0.05
rs9272117 chr6:32600411 HLA-DQA1 C - 5 T vs. C 0.383 (T) 0.392 (T) >1 (-) 16 (-) >0.05
rs9272061 chr6:32599250 HLA-DQA1 C - 4 A vs. G 0.375 (A) 0.375 (A) <1 (-) 0 (-) >0.05
rs9272134 chr6:32600705 HLA-DQA1 C - 5 C vs. G 0.383 (G) 0.35 (G) <1 (-) 17 (-) >0.05

Association studies for this region [+]