HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
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All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275145 chr6:32651363 HLA-DQB1 [+15203bp] All: C 103,235 14 T vs. C 0.45 (T) 0.258 (C) 0.95 (0.91-0.98) 0 (0-54) 8.26e-04
rs2894380 chr6:32664675 HLA-DQB1 [+28515bp] All: C 103,235 14 G vs. A 0.375 (G) 0.475 (A) 0.95 (0.92-0.98) 0 (0-32) 8.29e-04
rs6457622 chr6:32664163 HLA-DQB1 [+28003bp] All: C 103,235 14 C vs. A 0.358 (C) 0.483 (A) 0.95 (0.92-0.98) 0 (0-33) 8.65e-04
rs9271595 chr6:32591235 HLA-DQA1 [-4721bp] All: C 44,247 3 A vs. G - - 1.13 (1.05-1.21) 17 (0-91) 8.66e-04
rs9271596 chr6:32591237 HLA-DQA1 [-4719bp] All: C 44,247 3 G vs. A 0.392 (G) 0.383 (G) 0.89 (0.83-0.95) 17 (0-91) 8.66e-04
rs9275139 chr6:32651005 HLA-DQB1 [+14845bp] All: C 103,235 14 A vs. C 0.442 (A) 0.275 (C) 0.94 (0.91-0.98) 0 (0-55) 8.66e-04
rs2935909 chr6:32655962 HLA-DQB1 [+19802bp] All: C 93,567 12 G vs. T 0.308 (G) 0.45 (G) 0.91 (0.86-0.96) 0 (0-37) 8.84e-04
rs28383231 chr6:32584099 HLA-DQA1 [-11857bp] All: C 45,262 5 C vs. T 0.367 (C) 0.467 (T) 1.13 (1.05-1.21) 41 (0-78) 8.90e-04
rs28383230 chr6:32584088 HLA-DQA1 [-11868bp] All: C 45,262 5 T vs. C 0.367 (T) 0.442 (C) 1.13 (1.05-1.21) 42 (0-79) 9.05e-04
rs3104419 chr6:32580136 HLA-DQA1 [-15820bp] C - 5 T vs. C 0.5 (T) 0.433 (T) <1 (-) 0 (-) <0.05
rs9275116 chr6:32649952 HLA-DQB1 [+13792bp] All: C 99,286 13 C vs. T 0.45 (C) - 0.94 (0.90-0.97) 1 (0-57) 9.39e-04
rs9275131 chr6:32650467 HLA-DQB1 [+14307bp] All: C 99,286 13 T vs. C 0.45 (T) 0.283 (C) 0.94 (0.91-0.98) 1 (0-57) 9.43e-04
rs9275118 chr6:32649996 HLA-DQB1 [+13836bp] All: C 99,286 13 G vs. A - - 0.94 (0.90-0.97) 0 (0-56) 9.80e-04
rs2858861 chr6:32580331 HLA-DQA1 [-15625bp] C - 5 T vs. C 0.492 (T) 0.408 (T) <1 (-) 0 (-) <0.05
rs3021060 chr6:32651846 HLA-DQB1 [+15686bp] C - 11 C vs. G 0.267 (C) 0.383 (C) <1 (-) 0 (-) <0.05
rs2858860 chr6:32580366 HLA-DQA1 [-15590bp] C - 5 T vs. G 0.467 (T) 0.425 (T) <1 (-) 0 (-) <0.05
rs3021061 chr6:32651839 HLA-DQB1 [+15679bp] C - 11 C vs. G 0.267 (G) 0.392 (G) >1 (-) 0 (-) <0.05
rs33915496 chr6:32583979 HLA-DQA1 [-11977bp] All: C 45,262 5 G vs. A 0.375 (G) 0.433 (G) 0.88 (0.82-0.95) 0 (0-62) 0.001
rs28383224 chr6:32583653 HLA-DQA1 [-12303bp] All: C 45,262 5 A vs. G 0.35 (A) 0.458 (G) 1.12 (1.05-1.20) 46 (0-80) 0.001
rs3021062 chr6:32651741 HLA-DQB1 [+15581bp] C - 11 T vs. C 0.267 (T) 0.4 (T) <1 (-) 0 (-) <0.05
rs7750477 chr6:32651707 HLA-DQB1 [+15547bp] C - 11 C vs. G 0.267 (G) 0.408 (G) >1 (-) 0 (-) <0.05
rs4959105 chr6:32583146 HLA-DQA1 [-12810bp] C - 4 T vs. C 0.383 (T) 0.417 (T) <1 (-) 0 (-) <0.05
rs9271414 chr6:32587782 HLA-DQA1 [-8174bp] C - 4 T vs. C 0.425 (C) 0.4 (C) <1 (-) 0 (-) <0.05
rs9271415 chr6:32587786 HLA-DQA1 [-8170bp] C - 4 T vs. C 0.425 (C) 0.4 (C) <1 (-) 0 (-) <0.05
rs9275125 chr6:32650293 HLA-DQB1 [+14133bp] C - 11 A vs. T 0.442 (T) 0.283 (A) >1 (-) 8 (-) <0.05
rs9271510 chr6:32589467 HLA-DQA1 [-6489bp] C - 5 T vs. C 0.458 (T) 0.408 (T) >1 (-) 0 (-) <0.05
rs9275087 chr6:32648893 HLA-DQB1 [+12733bp] All: C 99,286 13 C vs. T 0.433 (C) 0.275 (T) 0.93 (0.89-0.97) 6 (0-59) 0.001
rs34694997 chr6:32591416 HLA-DQA1 [-4540bp] C - 5 T vs. C 0.183 (C) 0.133 (C) <1 (-) 31 (-) <0.05
rs9275086 chr6:32648809 HLA-DQB1 [+12649bp] All: C 99,286 13 G vs. A 0.45 (G) 0.283 (A) 0.93 (0.88-0.97) 6 (0-59) 0.001
rs9271586 chr6:32590899 HLA-DQA1 [-5057bp] All: C 91,003 11 G vs. T 0.425 (G) 0.475 (G) 1.08 (1.03-1.12) 33 (0-67) 0.002
rs9275134 chr6:32650612 HLA-DQB1 [+14452bp] C - 11 C vs. G 0.267 (G) 0.4 (G) >1 (-) 0 (-) <0.05
rs9270988 chr6:32574130 HLA-DRB1 [+16505bp] C - 5 A vs. G 0.367 (A) 0.183 (A) >1 (-) 16 (-) <0.05
rs9270898 chr6:32571903 HLA-DRB1 [+14278bp] C - 4 T vs. C - - >1 (-) 27 (-) <0.05
rs9275136 chr6:32650757 HLA-DQB1 [+14597bp] C - 12 T vs. C 0.45 (T) 0.283 (C) <1 (-) 12 (-) <0.05
rs9270895 chr6:32571873 HLA-DRB1 [+14248bp] C - 4 T vs. C - - <1 (-) 23 (-) <0.05
rs9275135 chr6:32650736 HLA-DQB1 [+14576bp] C - 12 T vs. C 0.442 (C) 0.283 (T) >1 (-) 11 (-) <0.05
rs9270896 chr6:32571876 HLA-DRB1 [+14251bp] C - 4 A vs. G - - >1 (-) 23 (-) <0.05
rs28366295 chr6:32560716 HLA-DRB1 [+3091bp] C - 4 T vs. C 0.358 (C) 0.317 (C) >1 (-) 0 (-) <0.05
rs28366294 chr6:32560715 HLA-DRB1 [+3090bp] C - 4 A vs. G 0.358 (A) 0.317 (A) <1 (-) 0 (-) <0.05
rs9275089 chr6:32648947 HLA-DQB1 [+12787bp] C - 11 A vs. T - - >1 (-) 16 (-) <0.05
rs2856695 chr6:32651894 HLA-DQB1 [+15734bp] C - 12 A vs. G 0.45 (G) 0.292 (A) >1 (-) 13 (-) <0.05
rs9275088 chr6:32648931 HLA-DQB1 [+12771bp] C - 11 A vs. T 0.417 (A) 0.35 (T) <1 (-) 16 (-) <0.05
rs9271487 chr6:32588985 HLA-DQA1 [-6971bp] C - 4 T vs. G - - <1 (-) 0 (-) <0.05
rs9271156 chr6:32577590 HLA-DQA1 [-18366bp] C - 5 A vs. G 0.358 (G) 0.183 (G) <1 (-) 0 (-) <0.05
rs9275085 chr6:32648735 HLA-DQB1 [+12575bp] C - 11 A vs. G 0.442 (A) 0.283 (G) <1 (-) 11 (-) <0.05
rs9270897 chr6:32571890 HLA-DRB1 [+14265bp] C - 4 A vs. G - - <1 (-) 26 (-) <0.05
rs9275112 chr6:32649773 HLA-DQB1 [+13613bp] C - 11 A vs. G 0.417 (A) 0.258 (G) <1 (-) 13 (-) <0.05
rs28366283 chr6:32560288 HLA-DRB1 [+2663bp] C - 4 A vs. C 0.425 (C) 0.408 (C) >1 (-) 0 (-) <0.05
rs9271115 chr6:32576731 HLA-DRB1 [+19106bp] C - 4 C vs. G - - >1 (-) 3 (-) <0.05
rs9270887 chr6:32571789 HLA-DRB1 [+14164bp] C - 4 A vs. C - - <1 (-) 16 (-) <0.05

Association studies for this region [+]