HLA-DQA1, chr6:32595956-32614839 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs532965 chr6:32577973 HLA-DQA1 [-17983bp] All: C 105,041 14 G vs. T 0.233 (G) 0.167 (G) 0.81 (0.77-0.86) 35 (0-66) 3.16e-12
Meta_image?name=rs532965

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs28366288 chr6:32560432 HLA-DRB1 [+2807bp] C - 4 T vs. C 0.383 (T) 0.342 (T) <1 (-) 0 (-) <0.05
rs28366300 chr6:32560875 HLA-DRB1 [+3250bp] C - 4 T vs. C 0.358 (T) 0.333 (T) <1 (-) 0 (-) <0.05
rs28366308 chr6:32561043 HLA-DRB1 [+3418bp] C - 4 A vs. T - - >1 (-) 0 (-) <0.05
rs28366301 chr6:32560883 HLA-DRB1 [+3258bp] C - 4 A vs. G 0.358 (A) 0.35 (A) <1 (-) 0 (-) <0.05
rs28366299 chr6:32560870 HLA-DRB1 [+3245bp] C - 4 A vs. T 0.375 (A) 0.333 (A) <1 (-) 0 (-) <0.05
rs9271153 chr6:32577549 HLA-DQA1 [-18407bp] C - 5 A vs. T 0.358 (A) 0.183 (A) >1 (-) 0 (-) <0.05
rs28366296 chr6:32560727 HLA-DRB1 [+3102bp] C - 4 A vs. C 0.35 (A) 0.342 (A) <1 (-) 0 (-) <0.05
rs28366302 chr6:32560934 HLA-DRB1 [+3309bp] C - 4 C vs. G 0.375 (C) 0.35 (C) <1 (-) 0 (-) <0.05
rs28366297 chr6:32560829 HLA-DRB1 [+3204bp] C - 4 C vs. G 0.35 (C) 0.342 (C) <1 (-) 0 (-) <0.05
rs28366298 chr6:32560859 HLA-DRB1 [+3234bp] C - 4 A vs. C 0.367 (C) 0.325 (C) >1 (-) 0 (-) <0.05
rs3129718 chr6:32659838 HLA-DQB1 [+23678bp] C - 7 T vs. C 0.192 (T) 0.008 (T) >1 (-) 0 (-) <0.05
rs9270890 chr6:32571822 HLA-DRB1 [+14197bp] C - 4 A vs. T - - >1 (-) 28 (-) <0.05
rs28366303 chr6:32560963 HLA-DRB1 [+3338bp] C - 4 C vs. G 0.367 (G) 0.35 (G) >1 (-) 0 (-) <0.05
rs9271162 chr6:32577715 HLA-DQA1 [-18241bp] C - 5 T vs. G 0.35 (G) 0.183 (G) <1 (-) 0 (-) <0.05
rs9271094 chr6:32576347 HLA-DRB1 [+18722bp] C - 4 C vs. G 0.35 (G) 0.183 (G) <1 (-) 14 (-) <0.05
rs3129762 chr6:32585755 HLA-DQA1 [-10201bp] C - 11 A vs. T 0.208 (T) 0.15 (T) <1 (-) 55 (-) <0.05
rs9271170 chr6:32577889 HLA-DQA1 [-18067bp] C - 5 T vs. C 0.375 (T) 0.183 (T) >1 (-) 0 (-) <0.05
rs9275102 chr6:32649361 HLA-DQB1 [+13201bp] C - 11 A vs. G 0.4 (A) 0.292 (G) <1 (-) 18 (-) <0.05
rs9275101 chr6:32649355 HLA-DQB1 [+13195bp] C - 11 A vs. G 0.442 (A) 0.292 (G) <1 (-) 18 (-) <0.05
rs28366311 chr6:32561137 HLA-DRB1 [+3512bp] C - 4 C vs. G - - >1 (-) 0 (-) <0.05
rs9271444 chr6:32588281 HLA-DQA1 [-7675bp] C - 3 A vs. G 0.442 (A) - >1 (-) 0 (-) <0.05
rs28366316 chr6:32561246 HLA-DRB1 [+3621bp] C - 4 T vs. C 0.392 (C) 0.358 (C) >1 (-) 0 (-) <0.05
rs28366310 chr6:32561128 HLA-DRB1 [+3503bp] C - 4 A vs. C 0.383 (C) 0.35 (C) >1 (-) 0 (-) <0.05
rs9275103 chr6:32649386 HLA-DQB1 [+13226bp] C - 11 T vs. C 0.408 (C) 0.292 (T) >1 (-) 17 (-) <0.05
rs28366314 chr6:32561201 HLA-DRB1 [+3576bp] C - 4 A vs. G 0.392 (G) 0.358 (G) >1 (-) 0 (-) <0.05
rs28366315 chr6:32561207 HLA-DRB1 [+3582bp] C - 4 T vs. C 0.4 (T) 0.358 (T) <1 (-) 0 (-) <0.05
rs9271440 chr6:32588240 HLA-DQA1 [-7716bp] C - 3 T vs. C 0.475 (C) - <1 (-) 0 (-) <0.05
rs28366312 chr6:32561175 HLA-DRB1 [+3550bp] C - 4 T vs. C 0.4 (C) 0.333 (C) >1 (-) 0 (-) <0.05
rs9271506 chr6:32589380 HLA-DQA1 [-6576bp] C - 4 T vs. C 0.492 (C) 0.45 (C) <1 (-) 0 (-) <0.05
rs9275106 chr6:32649475 HLA-DQB1 [+13315bp] C - 11 T vs. C 0.433 (C) 0.267 (T) >1 (-) 17 (-) <0.05
rs28366313 chr6:32561186 HLA-DRB1 [+3561bp] C - 4 A vs. G 0.4 (A) 0.333 (A) <1 (-) 0 (-) <0.05
rs9271507 chr6:32589394 HLA-DQA1 [-6562bp] C - 4 A vs. C 0.492 (C) 0.417 (C) <1 (-) 0 (-) <0.05
rs9270994 chr6:32574250 HLA-DRB1 [+16625bp] All: C 81,971 7 T vs. C 0.208 (T) 0.167 (T) 1.09 (1.03-1.16) 68 (30-86) 0.003
rs3021057 chr6:32652363 HLA-DQB1 [+16203bp] C - 12 T vs. C 0.383 (T) 0.317 (C) <1 (-) 20 (-) <0.05
rs9271505 chr6:32589375 HLA-DQA1 [-6581bp] C - 4 T vs. G - - >1 (-) 0 (-) <0.05
rs9275105 chr6:32649416 HLA-DQB1 [+13256bp] C - 11 T vs. C 0.392 (T) 0.267 (C) <1 (-) 17 (-) <0.05
rs3021058 chr6:32652359 HLA-DQB1 [+16199bp] C - 12 A vs. C 0.383 (C) 0.308 (A) >1 (-) 20 (-) <0.05
rs9271050 chr6:32575275 HLA-DRB1 [+17650bp] C - 4 A vs. G 0.358 (G) 0.158 (G) <1 (-) 32 (-) <0.05
rs9271088 chr6:32576175 HLA-DRB1 [+18550bp] C - 4 A vs. C 0.4 (A) 0.192 (A) >1 (-) 14 (-) <0.05
rs9271089 chr6:32576177 HLA-DRB1 [+18552bp] C - 4 T vs. G 0.408 (T) 0.192 (T) >1 (-) 14 (-) <0.05
rs9271051 chr6:32575290 HLA-DRB1 [+17665bp] C - 4 T vs. C 0.35 (T) 0.175 (T) >1 (-) 32 (-) <0.05
rs9271052 chr6:32575309 HLA-DRB1 [+17684bp] C - 4 T vs. C 0.35 (T) 0.175 (T) >1 (-) 32 (-) <0.05
rs9270902 chr6:32571962 HLA-DRB1 [+14337bp] C - 4 A vs. G 0.392 (A) 0.183 (A) >1 (-) 29 (-) <0.05
rs9271049 chr6:32575265 HLA-DRB1 [+17640bp] C - 4 T vs. C 0.358 (T) 0.175 (T) >1 (-) 32 (-) <0.05
rs9271463 chr6:32588535 HLA-DQA1 [-7421bp] C - 3 A vs. T 0.45 (A) - >1 (-) 0 (-) <0.05
rs9271058 chr6:32575406 HLA-DRB1 [+17781bp] C - 4 A vs. T 0.35 (A) 0.175 (A) >1 (-) 28 (-) <0.05
rs9270879 chr6:32571647 HLA-DRB1 [+14022bp] C - 4 A vs. C 0.442 (C) - <1 (-) 16 (-) <0.05
rs9270967 chr6:32573543 HLA-DRB1 [+15918bp] C - 5 T vs. C 0.383 (C) 0.2 (C) <1 (-) 25 (-) <0.05
rs112270441 chr6:32582980 HLA-DQA1 [-12976bp] C - 4 T vs. C 0.142 (T) - <1 (-) 0 (-) <0.05
rs9270985 chr6:32574027 HLA-DRB1 [+16402bp] C - 5 T vs. C 0.35 (T) 0.183 (T) >1 (-) 23 (-) <0.05

Association studies for this region [+]