HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs115580594 chr6:32673569 HLA-DQA2 [-35550bp] C - 11 A vs. G 0.133 (G) 0.15 (G) <1 (-) 73 (-) >0.05
rs17427887 chr6:32679107 HLA-DQA2 [-30012bp] C - 8 T vs. G 0.025 (T) - >1 (-) 53 (-) >0.05
rs116303320 chr6:32664791 HLA-DQB1 [+28631bp] C - 11 T vs. C 0.117 (T) 0.033 (T) >1 (-) 74 (-) >0.05
rs2857212 chr6:32740411 HLA-DQB2 [+9100bp] C - 12 A vs. G 0.408 (G) 0.483 (G) <1 (-) 18 (-) >0.05
rs1618221 chr6:32673762 HLA-DQA2 [-35357bp] C - 8 C vs. G - - >1 (-) 0 (-) >0.05
rs114756943 chr6:32719882 MIR3135B [+2126bp] C - 3 A vs. T - - <1 (-) 0 (-) >0.05
rs4713590 chr6:32659402 HLA-DQB1 [+23242bp] C - 11 T vs. C - - >1 (-) 35 (-) >0.05
rs79017203 chr6:32709543 HLA-DQA2 C - 3 T vs. C - 0.042 (C) >1 (-) 61 (-) >0.05
rs7771968 chr6:32709532 HLA-DQA2 C - 3 T vs. C 0.008 (C) - >1 (-) 61 (-) >0.05
rs28459946 chr6:32709709 HLA-DQA2 C - 3 T vs. C - 0.042 (C) >1 (-) 61 (-) >0.05
rs7755792 chr6:32709732 HLA-DQA2 C - 3 T vs. C 0.008 (T) 0.033 (T) <1 (-) 61 (-) >0.05
rs28459982 chr6:32709422 HLA-DQA2 C - 3 A vs. T 0.008 (T) 0.025 (T) >1 (-) 61 (-) >0.05
rs35169534 chr6:32663791 HLA-DQB1 [+27631bp] C - 11 A vs. G 0.133 (G) - <1 (-) 76 (-) >0.05
rs4568494 chr6:32672361 HLA-DQB1 [+36201bp] C - 11 A vs. G 0.15 (G) 0.125 (G) <1 (-) 73 (-) >0.05
rs9276410 chr6:32710396 HLA-DQA2 C - 11 A vs. G 0.417 (A) 0.217 (G) >1 (-) 17 (-) >0.05
rs17427431 chr6:32663644 HLA-DQB1 [+27484bp] C - 11 A vs. G 0.133 (A) 0.05 (A) >1 (-) 76 (-) >0.05
rs35122881 chr6:32663677 HLA-DQB1 [+27517bp] C - 11 T vs. C 0.133 (T) 0.075 (T) >1 (-) 76 (-) >0.05
rs112333001 chr6:32709317 HLA-DQA2 C - 3 A vs. G - - <1 (-) 61 (-) >0.05
rs13206018 chr6:32663497 HLA-DQB1 [+27337bp] C - 11 T vs. C 0.133 (T) 0.075 (T) >1 (-) 76 (-) >0.05
rs10947331 chr6:32676925 HLA-DQA2 [-32194bp] C - 8 A vs. G - - >1 (-) 0 (-) >0.05
rs1794270 chr6:32673819 HLA-DQA2 [-35300bp] C - 8 C vs. G - - <1 (-) 0 (-) >0.05
rs17219302 chr6:32680725 HLA-DQA2 [-28394bp] C - 11 T vs. C 0.192 (C) 0.375 (C) <1 (-) 26 (-) >0.05
rs17219309 chr6:32680727 HLA-DQA2 [-28392bp] C - 11 A vs. C 0.183 (C) 0.367 (C) <1 (-) 26 (-) >0.05
rs112692718 chr6:32685027 HLA-DQA2 [-24092bp] C - 5 A vs. T 0.008 (T) - >1 (-) 8 (-) >0.05
rs36030018 chr6:32667964 HLA-DQB1 [+31804bp] C - 11 C vs. G - 0.108 (C) >1 (-) 0 (-) >0.05
rs1794268 chr6:32674065 HLA-DQA2 [-35054bp] C - 8 T vs. C 0.033 (C) 0.058 (C) <1 (-) 0 (-) >0.05
rs34531599 chr6:32663978 HLA-DQB1 [+27818bp] C - 11 T vs. C 0.133 (T) 0.033 (T) >1 (-) 75 (-) >0.05
rs35239297 chr6:32663960 HLA-DQB1 [+27800bp] C - 11 A vs. G 0.133 (A) 0.025 (A) >1 (-) 75 (-) >0.05
rs1794265 chr6:32674737 HLA-DQA2 [-34382bp] C - 8 A vs. C 0.033 (G) 0.108 (A) >1 (-) 0 (-) >0.05
rs72844311 chr6:32659536 HLA-DQB1 [+23376bp] C - 10 T vs. C 0.133 (T) - >1 (-) 77 (-) >0.05
rs35900855 chr6:32664038 HLA-DQB1 [+27878bp] C - 11 A vs. G 0.133 (G) 0.033 (G) <1 (-) 75 (-) >0.05
rs17206210 chr6:32665636 HLA-DQB1 [+29476bp] C - 11 T vs. C 0.133 (T) - >1 (-) 74 (-) >0.05
rs139113058 chr6:32747601 HLA-DQB2 [+16290bp] C - 11 A vs. G - - <1 (-) 0 (-) >0.05
rs17206196 chr6:32665629 HLA-DQB1 [+29469bp] C - 11 T vs. G 0.133 (T) - >1 (-) 74 (-) >0.05
rs147804272 chr6:32662823 HLA-DQB1 [+26663bp] C - 11 T vs. C - - >1 (-) 76 (-) >0.05
rs149109754 chr6:32748285 HLA-DQB2 [+16974bp] C - 11 A vs. C - - >1 (-) 0 (-) >0.05
rs17206203 chr6:32665633 HLA-DQB1 [+29473bp] C - 11 A vs. G 0.125 (G) - <1 (-) 74 (-) >0.05
rs28577241 chr6:32709352 HLA-DQA2 C - 3 A vs. G - 0.042 (G) >1 (-) 62 (-) >0.05
rs75108103 chr6:32708960 HLA-DQA2 [-159bp] C - 4 T vs. C 0.008 (T) 0.033 (T) <1 (-) 46 (-) >0.05
rs113156102 chr6:32708831 HLA-DQA2 [-288bp] C - 4 T vs. C 0.008 (T) 0.017 (T) <1 (-) 46 (-) >0.05
rs112671150 chr6:32708882 HLA-DQA2 [-237bp] C - 4 A vs. G - 0.033 (A) <1 (-) 46 (-) >0.05
rs73400718 chr6:32709075 HLA-DQA2 [-44bp] C - 4 T vs. G - 0.025 (G) >1 (-) 46 (-) >0.05
rs34392107 chr6:32663954 HLA-DQB1 [+27794bp] C - 11 A vs. G 0.133 (A) 0.017 (A) >1 (-) 75 (-) >0.05
rs68067315 chr6:32663340 HLA-DQB1 [+27180bp] C - 11 A vs. G 0.125 (A) 0.075 (A) >1 (-) 76 (-) >0.05
rs17219295 chr6:32680697 HLA-DQA2 [-28422bp] C - 11 T vs. C 0.183 (T) 0.367 (T) >1 (-) 28 (-) >0.05
rs17219288 chr6:32680696 HLA-DQA2 [-28423bp] C - 11 A vs. G 0.183 (A) 0.367 (A) >1 (-) 28 (-) >0.05
rs35472814 chr6:32659897 HLA-DQB1 [+23737bp] C - 10 T vs. C 0.133 (C) 0.033 (C) <1 (-) 77 (-) >0.05
rs3129722 chr6:32676343 HLA-DQA2 [-32776bp] C - 8 A vs. C 0.033 (A) 0.05 (A) >1 (-) 0 (-) >0.05
rs34677551 chr6:32663936 HLA-DQB1 [+27776bp] C - 11 A vs. C 0.133 (C) 0.033 (C) <1 (-) 75 (-) >0.05
rs3129732 chr6:32685240 HLA-DQA2 [-23879bp] C - 10 C vs. G 0.1 (G) 0.058 (G) >1 (-) 0 (-) >0.05

Association studies for this region [+]