HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9276485 chr6:32718479 MIR3135B [+723bp] C - 5 T vs. C 0.083 (T) - <1 (-) 18 (-) >0.05
rs9276486 chr6:32718481 MIR3135B [+725bp] C - 5 C vs. G 0.083 (C) - <1 (-) 18 (-) >0.05
rs113194380 chr6:32671391 HLA-DQB1 [+35231bp] C - 11 T vs. C - 0.133 (T) >1 (-) 0 (-) >0.05
rs116540263 chr6:32671372 HLA-DQB1 [+35212bp] C - 11 A vs. G 0.017 (A) 0.058 (A) >1 (-) 0 (-) >0.05
rs3135191 chr6:32678896 HLA-DQA2 [-30223bp] C - 8 A vs. C 0.033 (A) 0.075 (A) >1 (-) 0 (-) >0.05
rs9275505 chr6:32674058 HLA-DQA2 [-35061bp] C - 11 A vs. G 0.308 (G) 0.158 (G) >1 (-) 70 (-) >0.05
rs112927854 chr6:32663259 HLA-DQB1 [+27099bp] C - 11 T vs. C - - >1 (-) 76 (-) >0.05
rs113846532 chr6:32660147 HLA-DQB1 [+23987bp] C - 3 T vs. C - - >1 (-) 37 (-) >0.05
rs113556552 chr6:32678064 HLA-DQA2 [-31055bp] C - 4 T vs. C - 0.033 (T) >1 (-) 13 (-) >0.05
chr6:32745721 chr6:32745721 HLA-DQB2 [+14410bp] C - 3 T vs. C - - >1 (-) 0 (-) >0.05
rs9276409 chr6:32710377 HLA-DQA2 C - 10 T vs. C 0.383 (T) 0.217 (T) <1 (-) 17 (-) >0.05
rs9275587 chr6:32680379 HLA-DQA2 [-28740bp] C - 12 T vs. C 0.5 (T) 0.392 (T) >1 (-) 25 (-) >0.05
rs3129727 chr6:32679690 HLA-DQA2 [-29429bp] C - 8 T vs. C 0.033 (T) 0.067 (T) >1 (-) 0 (-) >0.05
rs9276031 chr6:32695361 HLA-DQA2 [-13758bp] C - 5 T vs. C - - <1 (-) 0 (-) >0.05
rs3129728 chr6:32680149 HLA-DQA2 [-28970bp] C - 8 A vs. G 0.033 (A) 0.075 (A) >1 (-) 0 (-) >0.05
rs3129729 chr6:32680277 HLA-DQA2 [-28842bp] C - 8 A vs. C 0.025 (C) 0.075 (C) <1 (-) 0 (-) >0.05
rs9404997 chr6:32680288 HLA-DQA2 [-28831bp] C - 11 A vs. G 0.183 (A) 0.367 (A) >1 (-) 36 (-) >0.05
rs9391745 chr6:32680283 HLA-DQA2 [-28836bp] C - 11 A vs. G 0.183 (G) 0.367 (G) <1 (-) 36 (-) >0.05
rs2647088 chr6:32681518 HLA-DQA2 [-27601bp] C - 11 A vs. G 0.183 (G) 0.367 (G) <1 (-) 33 (-) >0.05
rs35030589 chr6:32672903 HLA-DQA2 [-36216bp] C - 11 A vs. G 0.142 (A) 0.125 (A) >1 (-) 73 (-) >0.05
rs6935723 chr6:32681669 HLA-DQA2 [-27450bp] C - 11 T vs. C 0.175 (C) 0.367 (C) <1 (-) 33 (-) >0.05
rs62396669 chr6:32748461 HLA-DQB2 [+17150bp] C - 12 C vs. G 0.083 (C) 0.225 (C) >1 (-) 36 (-) >0.05
rs6935578 chr6:32683552 HLA-DQA2 [-25567bp] C - 4 A vs. G 0.008 (G) - >1 (-) 29 (-) >0.05
rs118116221 chr6:32740782 HLA-DQB2 [+9471bp] C - 12 T vs. G - 0.058 (T) <1 (-) 0 (-) >0.05
rs9276609 chr6:32741487 HLA-DQB2 [+10176bp] C - 12 C vs. G 0.283 (G) 0.325 (G) >1 (-) 0 (-) >0.05
rs9404996 chr6:32680173 HLA-DQA2 [-28946bp] C - 11 A vs. G 0.183 (A) 0.342 (A) >1 (-) 31 (-) >0.05
rs9391743 chr6:32680172 HLA-DQA2 [-28947bp] C - 11 T vs. C 0.167 (C) 0.342 (C) <1 (-) 31 (-) >0.05
rs2647089 chr6:32681568 HLA-DQA2 [-27551bp] C - 11 T vs. C 0.183 (C) 0.367 (C) <1 (-) 33 (-) >0.05
rs17219918 chr6:32734536 HLA-DQB2 [+3225bp] C - 11 A vs. G 0.075 (A) 0.025 (A) >1 (-) 0 (-) >0.05
rs114801596 chr6:32663093 HLA-DQB1 [+26933bp] C - 5 T vs. G - 0.092 (G) <1 (-) 0 (-) >0.05
rs2858333 chr6:32681085 HLA-DQA2 [-28034bp] C - 11 A vs. G 0.183 (G) 0.367 (G) <1 (-) 34 (-) >0.05
rs115328288 chr6:32661335 HLA-DQB1 [+25175bp] C - 9 A vs. G 0.017 (G) 0.117 (G) <1 (-) 0 (-) >0.05
chr6:32745517 chr6:32745517 HLA-DQB2 [+14206bp] C - 4 A vs. C - - >1 (-) 0 (-) >0.05
rs114895478 chr6:32661440 HLA-DQB1 [+25280bp] C - 9 A vs. T 0.008 (T) 0.125 (T) <1 (-) 0 (-) >0.05
rs115962869 chr6:32661432 HLA-DQB1 [+25272bp] C - 9 T vs. G 0.008 (G) 0.125 (G) <1 (-) 0 (-) >0.05
rs2647087 chr6:32681049 HLA-DQA2 [-28070bp] C - 11 A vs. C 0.183 (C) 0.367 (C) <1 (-) 33 (-) >0.05
rs7745656 chr6:32680970 HLA-DQA2 [-28149bp] C - 11 T vs. G 0.183 (T) 0.367 (T) >1 (-) 33 (-) >0.05
rs79771376 chr6:32746897 HLA-DQB2 [+15586bp] C - 12 A vs. G 0.092 (G) 0.183 (G) <1 (-) 36 (-) >0.05
rs4947348 chr6:32747410 HLA-DQB2 [+16099bp] C - 12 T vs. G 0.092 (G) 0.183 (G) <1 (-) 35 (-) >0.05
rs1794523 chr6:32659192 HLA-DQB1 [+23032bp] C - 6 A vs. C 0.025 (A) 0.05 (A) >1 (-) 0 (-) >0.05
rs17427599 chr6:32667364 HLA-DQB1 [+31204bp] C - 11 T vs. C 0.208 (T) 0.208 (T) >1 (-) 68 (-) >0.05
rs3916766 chr6:32681645 HLA-DQA2 [-27474bp] C - 11 A vs. T 0.183 (A) 0.367 (A) >1 (-) 31 (-) >0.05
rs28371347 chr6:32680537 HLA-DQA2 [-28582bp] C - 11 T vs. C 0.192 (C) 0.358 (C) <1 (-) 31 (-) >0.05
rs28371346 chr6:32680532 HLA-DQA2 [-28587bp] C - 11 T vs. C 0.192 (C) 0.358 (C) <1 (-) 31 (-) >0.05
rs2858332 chr6:32681161 HLA-DQA2 [-27958bp] C - 12 T vs. G 0.492 (T) 0.392 (G) <1 (-) 24 (-) >0.05
rs9501184 chr6:32680199 HLA-DQA2 [-28920bp] C - 11 A vs. G 0.183 (A) 0.35 (A) >1 (-) 30 (-) >0.05
rs112608098 chr6:32665270 HLA-DQB1 [+29110bp] C - 11 A vs. C 0.017 (A) 0.133 (A) >1 (-) 0 (-) >0.05
rs112317305 chr6:32667199 HLA-DQB1 [+31039bp] C - 11 T vs. C 0.008 (C) 0.108 (C) <1 (-) 0 (-) >0.05
rs73396649 chr6:32682928 HLA-DQA2 [-26191bp] C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs72844343 chr6:32660993 HLA-DQB1 [+24833bp] C - 8 A vs. T 0.117 (T) - <1 (-) 70 (-) >0.05

Association studies for this region [+]