HLA-DQA2, chr6:32709119-32714992 +/- 50000 base pairs
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Most significant meta-analysis in this region
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Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs9275326 chr6:32666660 HLA-DQB1 [+30500bp] All: C 99,286 13 T vs. C 0.175 (T) 0.083 (T) 0.80 (0.75-0.85) 2 (0-58) 5.81e-13
Meta_image?name=rs9275326

All meta-analyses in this region

Polymorphism Location (hg19) Gene Ethnicity # Samples # Studies Allele contrast 1000G CEU 1000G CHB+JPT Meta OR (95%CI) I2 (95%CI) Meta P-value
rs4947349 chr6:32747790 HLA-DQB2 [+16479bp] C - 12 T vs. G 0.092 (T) - <1 (-) 9 (-) >0.05
rs28557364 chr6:32687319 HLA-DQA2 [-21800bp] C - 9 T vs. C - - <1 (-) 0 (-) >0.05
rs9275661 chr6:32686248 HLA-DQA2 [-22871bp] C - 11 T vs. C 0.2 (C) 0.075 (C) <1 (-) 0 (-) >0.05
rs4947258 chr6:32747502 HLA-DQB2 [+16191bp] C - 12 A vs. G 0.092 (G) - >1 (-) 7 (-) >0.05
rs9275659 chr6:32686103 HLA-DQA2 [-23016bp] C - 11 A vs. C 0.2 (A) 0.075 (A) >1 (-) 0 (-) >0.05
rs9275657 chr6:32685967 HLA-DQA2 [-23152bp] C - 11 A vs. G 0.2 (A) 0.075 (A) >1 (-) 0 (-) >0.05
rs2858881 chr6:32703845 HLA-DQA2 [-5274bp] C - 8 T vs. C - 0.092 (C) >1 (-) 0 (-) >0.05
rs117735661 chr6:32711822 HLA-DQA2 C - 5 T vs. C - 0.133 (T) >1 (-) 0 (-) >0.05
rs117358580 chr6:32711787 HLA-DQA2 C - 5 A vs. G - 0.133 (A) >1 (-) 0 (-) >0.05
rs117489278 chr6:32711433 HLA-DQA2 C - 5 A vs. G - 0.133 (A) >1 (-) 0 (-) >0.05
rs9275652 chr6:32685822 HLA-DQA2 [-23297bp] C - 11 C vs. G 0.2 (C) 0.067 (C) >1 (-) 0 (-) >0.05
rs115303597 chr6:32743648 HLA-DQB2 [+12337bp] C - 12 T vs. C 0.025 (T) - <1 (-) 0 (-) >0.05
rs151102334 chr6:32743495 HLA-DQB2 [+12184bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs9276300 chr6:32703185 HLA-DQA2 [-5934bp] C - 11 T vs. C 0.067 (T) - <1 (-) 0 (-) >0.05
rs113467005 chr6:32668699 HLA-DQB1 [+32539bp] C - 6 A vs. T - - <1 (-) 1 (-) >0.05
rs112230901 chr6:32668483 HLA-DQB1 [+32323bp] C - 6 T vs. C - - <1 (-) 1 (-) >0.05
rs9275655 chr6:32685918 HLA-DQA2 [-23201bp] C - 11 A vs. G 0.2 (G) 0.075 (G) <1 (-) 0 (-) >0.05
rs9275750 chr6:32689061 HLA-DQA2 [-20058bp] C - 11 T vs. C - - >1 (-) 13 (-) >0.05
rs62396666 chr6:32740618 HLA-DQB2 [+9307bp] C - 11 A vs. G - - >1 (-) 1 (-) >0.05
rs117392376 chr6:32672892 HLA-DQA2 [-36227bp] C - 5 A vs. G - 0.042 (A) >1 (-) 13 (-) >0.05
rs3129736 chr6:32685953 HLA-DQA2 [-23166bp] C - 12 T vs. C 0.3 (C) 0.158 (C) >1 (-) 1 (-) >0.05
rs2859126 chr6:32696358 HLA-DQA2 [-12761bp] C - 5 T vs. C - 0.05 (C) <1 (-) 0 (-) >0.05
rs150463293 chr6:32755842 HLA-DQB2 [+24531bp] C - 12 T vs. C - - <1 (-) 0 (-) >0.05
rs2859123 chr6:32696901 HLA-DQA2 [-12218bp] C - 5 T vs. C - - >1 (-) 0 (-) >0.05
rs9275663 chr6:32686380 HLA-DQA2 [-22739bp] C - 11 C vs. G 0.2 (G) 0.058 (G) <1 (-) 0 (-) >0.05
rs3134967 chr6:32659315 HLA-DQB1 [+23155bp] C - 7 A vs. G - - >1 (-) 17 (-) >0.05
rs114289808 chr6:32662613 HLA-DQB1 [+26453bp] C - 11 A vs. T 0.017 (T) 0.067 (T) <1 (-) 0 (-) >0.05
rs118033438 chr6:32753873 HLA-DQB2 [+22562bp] C - 6 A vs. T - 0.042 (A) >1 (-) 0 (-) >0.05
rs2647011 chr6:32661915 HLA-DQB1 [+25755bp] C - 11 A vs. C 0.333 (A) - <1 (-) 0 (-) >0.05
rs9275761 chr6:32689274 HLA-DQA2 [-19845bp] C - 11 T vs. C 0.375 (T) - <1 (-) 13 (-) >0.05
rs2859117 chr6:32697370 HLA-DQA2 [-11749bp] C - 5 T vs. C - - <1 (-) 0 (-) >0.05
rs9275748 chr6:32689039 HLA-DQA2 [-20080bp] C - 11 A vs. G 0.367 (A) 0.217 (A) <1 (-) 18 (-) >0.05
rs2859114 chr6:32697741 HLA-DQA2 [-11378bp] C - 5 T vs. C - 0.058 (C) <1 (-) 0 (-) >0.05
rs2859115 chr6:32697603 HLA-DQA2 [-11516bp] C - 5 T vs. G - 0.058 (T) >1 (-) 0 (-) >0.05
rs17206350 chr6:32675067 HLA-DQA2 [-34052bp] C - 12 T vs. C 0.4 (C) 0.45 (T) <1 (-) 22 (-) >0.05
rs3873444 chr6:32682724 HLA-DQA2 [-26395bp] C - 11 T vs. C 0.117 (T) - >1 (-) 1 (-) >0.05
rs112845110 chr6:32738847 HLA-DQB2 [+7536bp] C - 3 A vs. G - - >1 (-) 0 (-) >0.05
rs2858316 chr6:32662501 HLA-DQB1 [+26341bp] C - 12 A vs. T 0.083 (T) - >1 (-) 0 (-) >0.05
rs9275751 chr6:32689072 HLA-DQA2 [-20047bp] C - 11 A vs. G 0.35 (A) 0.15 (A) <1 (-) 14 (-) >0.05
rs3129717 chr6:32659308 HLA-DQB1 [+23148bp] C - 7 T vs. C - - >1 (-) 17 (-) >0.05
rs116821747 chr6:32730048 HLA-DQB2 C - 3 T vs. C - - <1 (-) 0 (-) >0.05
rs9276452 chr6:32715722 HLA-DQA2 [+730bp] C - 11 A vs. G 0.083 (G) - >1 (-) 10 (-) >0.05
rs9275749 chr6:32689056 HLA-DQA2 [-20063bp] C - 11 A vs. G 0.333 (G) 0.192 (G) >1 (-) 14 (-) >0.05
rs9275745 chr6:32689020 HLA-DQA2 [-20099bp] C - 11 A vs. G 0.408 (A) 0.167 (A) <1 (-) 12 (-) >0.05
rs9275752 chr6:32689078 HLA-DQA2 [-20041bp] C - 11 A vs. G 0.342 (G) 0.15 (G) >1 (-) 14 (-) >0.05
rs6457638 chr6:32703407 HLA-DQA2 [-5712bp] C - 11 C vs. G 0.442 (C) 0.183 (C) <1 (-) 30 (-) >0.05
rs9275569 chr6:32678136 HLA-DQA2 [-30983bp] C - 12 T vs. C 0.425 (C) 0.392 (C) <1 (-) 9 (-) >0.05
rs2647014 chr6:32664279 HLA-DQB1 [+28119bp] C - 12 T vs. C 0.075 (T) 0.175 (T) <1 (-) 0 (-) >0.05
rs2647005 chr6:32664760 HLA-DQB1 [+28600bp] C - 12 A vs. G 0.075 (G) 0.175 (G) >1 (-) 0 (-) >0.05
rs28371274 chr6:32674558 HLA-DQA2 [-34561bp] C - 12 T vs. C - 0.083 (C) >1 (-) 0 (-) >0.05

Association studies for this region [+]